DRSC/TRiP Functional Genomics Resources

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Protein Alignment Culd and lrp13

DIOPT Version :9

Sequence 1:NP_729364.1 Gene:Culd / 38946 FlyBaseID:FBgn0035880 Length:965 Species:Drosophila melanogaster
Sequence 2:XP_021327248.1 Gene:lrp13 / 562438 ZFINID:ZDB-GENE-130729-1 Length:1354 Species:Danio rerio


Alignment Length:93 Identity:27/93 - (29%)
Similarity:39/93 - (41%) Gaps:24/93 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   401 KESHVAPILNGYYIRLRGVFGMSSKLAIV---YSVFNYLNCYIGSE-------------FLCGNN 449
            |||   |:..|.|     .|..|||...:   :......:|..||:             |.||::
Zfish   381 KES---PVQCGEY-----QFSCSSKTQCIPQSWRCDGSEDCRDGSDESACASVSCPPHLFQCGSS 437

  Fly   450 HCISIRLHCDGFDHCGDGSDEPDSCEED 477
            .|:.....|:|..:|.|||||..||:.:
Zfish   438 ECVEFSQLCNGVTNCLDGSDEGGSCQTE 465

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CuldNP_729364.1 CUB 200..298 CDD:238001
LDLa 442..472 CDD:238060 13/42 (31%)
lrp13XP_021327248.1 LDLa 36..71 CDD:238060
LDLa 75..110 CDD:238060
LDLa 119..149 CDD:238060
LDLa 195..223 CDD:238060
LDLa 227..262 CDD:238060
LDLa 271..301 CDD:238060
LDLa 306..340 CDD:238060
LDLa 351..380 CDD:238060
LDLa 387..422 CDD:238060 9/39 (23%)
LDLa 427..458 CDD:197566 10/30 (33%)
EGF_CA 503..542 CDD:311536
PHA02142 <569..>666 CDD:333147
LY <622..648 CDD:214531
Ldl_recept_b 680..718 CDD:278487
LY 702..744 CDD:214531
LY 744..786 CDD:214531
FXa_inhibition 818..848 CDD:317114
LY 976..1021 CDD:214531
FXa_inhibition 1130..1162 CDD:317114
LDLa 1170..1202 CDD:197566
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1215
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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