Protein Alignment Culd and Vldlr

DIOPT Version :9

• Sequence 1: NP_729364.1
• Gene: Culd / 38946
• FlyBaseID: FBgn0035880
• Length: 965
• Species: Drosophila melanogaster
• Sequence 2: NP_038731.2
• Gene: Vldlr / 22359
• MGIID: 98935
• Length: 873
• Species: Mus musculus
• Alignment Length: 34
• Identity: 17/34 - (50%)
• Similarity: 21/34 - (61%)
• Gaps: 1/34 - (2%)

  Fly   442 SEFLCGNNHCISIRLHCDGFDHCGDGSDE-PDSC 474
            |:|:|.|..|:..|..|||...|.||||| |:.|
Mouse    75 SDFVCKNGQCVPNRWQCDGDPDCEDGSDESPEQC 108

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Culd	NP_729364.1	CUB	200..298	CDD:238001
		LDLa	442..472	CDD:238060	15/30 (50%)
Vldlr	NP_038731.2	LDLa	33..67	CDD:238060
		LDLa	71..103	CDD:197566	13/27 (48%)
		Ldl_recept_a	111..149	CDD:365841
		Ldl_recept_a	153..188	CDD:365841
		Ldl_recept_a	192..224	CDD:365841
		Ldl_recept_a	237..273	CDD:365841
		Ldl_recept_a	276..312	CDD:365841
		Ldl_recept_a	320..350	CDD:365841
		FXa_inhibition	360..394	CDD:373209
		EGF_CA	396..426	CDD:214542
		LDL-receptor class B 1	439..480
		LY	461..499	CDD:214531
		LDL-receptor class B 2	481..524
		Ldl_recept_b	481..521	CDD:278487
		LY	508..547	CDD:214531
		LDL-receptor class B 3	525..567
		LDL-receptor class B 4	568..611
		Ldl_recept_b	568..608	CDD:278487
		LY	592..634	CDD:214531
		LDL-receptor class B 5	612..654
		LDL-receptor class B 6	655..697
		Ldl_recept_b	655..694	CDD:278487
		FXa_inhibition	711..749	CDD:373209
		Clustered O-linked oligosaccharides	751..790
		Endocytosis signal. /evidence=ECO:0000255	832..837

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG1215
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.900