DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Culd and F14B4.1

DIOPT Version :9

Sequence 1:NP_729364.1 Gene:Culd / 38946 FlyBaseID:FBgn0035880 Length:965 Species:Drosophila melanogaster
Sequence 2:NP_492474.2 Gene:F14B4.1 / 172750 WormBaseID:WBGene00008779 Length:722 Species:Caenorhabditis elegans


Alignment Length:99 Identity:26/99 - (26%)
Similarity:35/99 - (35%) Gaps:25/99 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   437 NCYIGSEFLCG--NNHCISIRLHCDGFDHCGDGSDE----PDSCEEDWAHLHHDRRWYSHK---P 492
            || ..|:..||  :..|||....|||...|.:.:||    |..|.......|.     :||   |
 Worm   621 NC-SESQIECGGADPKCISKIYLCDGLAQCSNQADEEKCPPRICLPGQFQCHD-----NHKCLPP 679

  Fly   493 NYYFPKIDQYPDLK----------TATGIFIIST 516
            .....|:....|..          |..|.|:::|
 Worm   680 GGLCDKVTDCSDSSDEIYCEYQKTTEKGQFVLNT 713

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CuldNP_729364.1 CUB 200..298 CDD:238001
LDLa 442..472 CDD:238060 12/35 (34%)
F14B4.1NP_492474.2 vWFA <272..313 CDD:294047
LY 343..383 CDD:214531
LY 391..425 CDD:214531
Ldl_recept_b 448..486 CDD:278487
LY 470..512 CDD:214531
LY 513..549 CDD:214531
FXa_inhibition 588..618 CDD:291342
LDLa 622..658 CDD:238060 13/36 (36%)
LDLa 663..698 CDD:238060 7/39 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1215
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.