DRSC/TRiP Functional Genomics Resources

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Protein Alignment Culd and LDLRAD3

DIOPT Version :10

Sequence 1:NP_729364.1 Gene:Culd / 38946 FlyBaseID:FBgn0035880 Length:965 Species:Drosophila melanogaster
Sequence 2:NP_777562.1 Gene:LDLRAD3 / 143458 HGNCID:27046 Length:345 Species:Homo sapiens


Alignment Length:297 Identity:62/297 - (20%)
Similarity:97/297 - (32%) Gaps:114/297 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   442 SEFLCGNNHCISIRLHCDGFDHCGDGSDEPDSCEEDWAHLHHDRRWYSHKPN------------Y 494
            :.:.|.|..||.....|||.::|.|.||| :|||.            |.:|.            .
Human   116 ARYHCKNGLCIDKSFICDGQNNCQDNSDE-ESCES------------SQEPGSGQVFVTSENQLV 167

  Fly   495 YFPKIDQYPDLKTATGIFIISTLGIFGVLSGWMVILYRMGVRARHQRELQSHLQTI-------SE 552
            |:|.|                |..|.|....:::::..:.:...|||: :::|.|:       ..
Human   168 YYPSI----------------TYAIIGSSVIFVLVVALLALVLHHQRK-RNNLMTLPVHRLQHPV 215

  Fly   553 LLDR-------------------------QDEDRTPDEPPSYEAPPDYEEVIKVGMQQELREPRR 592
            ||.|                         |.|....:    ..:||.|.|.:           ..
Human   216 LLSRLVVLDHPHHCNVTYNVNNGIQYVASQAEQNASE----VGSPPSYSEAL-----------LD 265

  Fly   593 QRRA-RRAPPRDRSCSRAASNCTVQSVLPLHRSCTLERDQEQPSTSAAAMTHAVAATDTTEDAEH 656
            ||.| ...||...|....:.|   |:.||.:||        :..::.:|.:.|.::..:.||..|
Human   266 QRPAWYDLPPPPYSSDTESLN---QADLPPYRS--------RSGSANSASSQAASSLLSVEDTSH 319

  Fly   657 V--QTMAQRMLLATAICGTAGTSLPAAKESGQRVQSV 691
            .  |...|.           ||:.|...|..|..:.|
Human   320 SPGQPGPQE-----------GTAEPRDSEPSQGTEEV 345

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CuldNP_729364.1 CUB 200..298 CDD:238001
LDLa 442..472 CDD:238060 12/29 (41%)
LDLRAD3NP_777562.1 (Microbial infection) Interaction with Venezuelan equine encephalitis virus/VEEV spike proteins E1 and E2. /evidence=ECO:0000269|PubMed:34646021 30..57
LDLa 32..64 CDD:238060
LDLa 71..106 CDD:238060
LDLa 113..147 CDD:238060 12/31 (39%)
Involved in ITCH interaction. /evidence=ECO:0000269|PubMed:26854353 256..259 2/2 (100%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 270..345 21/96 (22%)
Involved in ITCH interaction. /evidence=ECO:0000269|PubMed:26854353 275..278 1/2 (50%)
Blue background indicates that the domain is not in the aligned region.

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