DRSC/TRiP Functional Genomics Resources

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Protein Alignment Culd and lrp2b

DIOPT Version :9

Sequence 1:NP_729364.1 Gene:Culd / 38946 FlyBaseID:FBgn0035880 Length:965 Species:Drosophila melanogaster
Sequence 2:XP_021335953.1 Gene:lrp2b / 101886177 ZFINID:ZDB-GENE-111115-1 Length:4577 Species:Danio rerio


Alignment Length:629 Identity:123/629 - (19%)
Similarity:185/629 - (29%) Gaps:258/629 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 DGRRHF----LELGSPAG-------------EVHARNVTTTAY----RSSPL------------- 72
            ||...|    ..||||.|             :.|...|.|..|    |.:.|             
Zfish   512 DGSNRFDLVRTRLGSPTGITLDLVTKRVYWTDSHFNLVETVTYSGLDRKTVLNGGHQVPHPFGIS 576

  Fly    73 VFKNDAVAGDVWYQCSLELVTCAECVIRV--------AFTYANFSK-----------------SC 112
            ||:|.|...| |.:..         |||.        .|.|.:.::                 .|
Zfish   577 VFENHAFFTD-WVKMG---------VIRTNRFNGSDPTFLYRSTNRPGQIVVSHPALQPFVINPC 631

  Fly   113 G-NTGGKSSMCPCEHIQFSEP---------PYD---------------------------STISG 140
            | :.||...:|...|...::.         .||                           ..:|.
Zfish   632 GRHNGGCQQICLLSHRTDNDGLGYRCMCRLGYDLQDDRHSCFKIKDYLLVAYAQAVRGIPLNVSS 696

  Fly   141 QE------------FCGDG------------------KVFRSKTRTLQLKFF--YRASNAHVFSL 173
            ||            |.|.|                  .:::|.......|..  ||.......:.
Zfish   697 QEDVTLPLSGLADTFSGSGVEYDASVESVFYNDRMRQLIYKSNINGTSHKVLTGYRVGAVESMAY 761

  Fly   174 QYFSE---------RNV---RIVSGSPKQSIVGN-----------------GSTKSQPQVISTPY 209
            .:.|:         |:|   ::..|| :|.||.|                 .|...:|.||:..|
Zfish   762 DWTSKILFWTSSTYRSVCAFKVTDGS-RQDIVKNLIYPRGIAVHPSAGYLFWSDWYRPAVITRAY 825

  Fly   210 -----------FPMAYPRDYGIEHILTCEADNCQVRLDFTDFQLGLTSTLEI-------FDSNGQ 256
                       ..:.:|....:::::.        ||.:.|.||.....:.|       |.|.||
Zfish   826 TDGSNAVPLINTTLGWPNGLAVDYMMD--------RLYWVDAQLDRIEHVSIDGFDRQAFSSIGQ 882

  Fly   257 MLDSYTGEHFRPPITVSSGKSLLLQFRGNSATGVGFRAEVSFVSSKQLKDERLVPYTDCGGMVTG 321
            :...::       :|:.:....:..:|.||.    ||                :...|.|..:..
Zfish   883 ITHPFS-------LTIHTDHLFVSDWRTNSV----FR----------------MRKRDGGDNIML 920

  Fly   322 PGGAITMMNMIENATDVR-LFD--CIWIIKPGNNYMMMKTHISLRVDDF-YGMAARSELTIRQGT 382
            ..|...:||:...:.|:: ||.  |..|.....::....|..|.||... :||..       |..
Zfish   921 RKGISGIMNIKAYSADLQDLFKSRCNMIPNGRCSHFCFPTPASSRVCGCPFGMKL-------QEN 978

  Fly   383 TSDAVEIENVMWPNNGLSKESHVAPILNGYYI----RLRGVFGMSSKLAIVYSVFNYLNCYIGS- 442
            ..|.|:.::...|::...  .:..|...|..:    |..||.....|.       :.:||.:.. 
Zfish   979 QRDCVKDDSEPPPDDNCG--DYAFPCDGGRCVPNTYRCDGVNDCVDKT-------DEVNCTLPGA 1034

  Fly   443 -----EFLCGNNHCISIRLHCDGFDHCGDGSDE-------PDSC 474
                 .|.|||.|||..|..|||.|.|||||||       |.:|
Zfish  1035 TCSPYAFTCGNKHCIPARWRCDGHDDCGDGSDETNCPTRGPTTC 1078

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CuldNP_729364.1 CUB 200..298 CDD:238001 21/115 (18%)
LDLa 442..472 CDD:238060 19/42 (45%)
lrp2bXP_021335953.1 LDLa 2..34 CDD:238060
LDLa 38..71 CDD:197566
LDLa 80..114 CDD:238060
LDLa 123..151 CDD:238060
LDLa 155..189 CDD:238060
LDLa 194..228 CDD:238060
LDLa 235..269 CDD:238060
FXa_inhibition 324..>347 CDD:317114
LY 429..469 CDD:214531
LY 471..516 CDD:214531 2/3 (67%)
LY 519..559 CDD:214531 9/39 (23%)
FXa_inhibition 631..672 CDD:317114 8/40 (20%)
Ldl_recept_b 808..848 CDD:278487 6/39 (15%)
LY 834..874 CDD:214531 7/47 (15%)
FXa_inhibition 950..982 CDD:317114 7/38 (18%)
LDLa 995..1029 CDD:238060 6/42 (14%)
LDLa 1036..1070 CDD:238060 19/33 (58%)
LDLa 1078..1112 CDD:238060 1/1 (100%)
LDLa 1119..1153 CDD:238060
LDLa 1157..1192 CDD:238060
LDLa 1200..1234 CDD:238060
LDLa 1241..1275 CDD:238060
LDLa 1282..1314 CDD:197566
FXa_inhibition 1323..1358 CDD:317114
EGF_CA 1360..1398 CDD:214542
YncE 1388..>1660 CDD:331368
LY 1470..1512 CDD:214531
Ldl_recept_b 1535..1575 CDD:278487
LY 1559..1601 CDD:214531
LY 1789..1824 CDD:214531
LY 1837..1879 CDD:214531
LY 1922..1958 CDD:214531
FXa_inhibition 1991..2027 CDD:317114
Ldl_recept_b 2170..2210 CDD:278487
LY 2195..2236 CDD:214531
LY 2427..2468 CDD:214531
LY 2468..2510 CDD:214531
LY 2513..2553 CDD:214531
FXa_inhibition 2623..2660 CDD:317114
LDLa 2667..2699 CDD:197566
LDLa 2709..2743 CDD:238060
LDLa 2750..2785 CDD:238060
LDLa 2789..2822 CDD:197566
LDLa 2831..2863 CDD:197566
LDLa 2873..2905 CDD:197566
LDLa 2915..2952 CDD:197566
LDLa 2961..2995 CDD:238060
LDLa 2999..3031 CDD:197566
Ldl_recept_a 3042..3077 CDD:278486
cEGF 3100..3123 CDD:315355
vWFA <3115..3158 CDD:320736
LY 3189..3229 CDD:214531
LY 3230..3272 CDD:214531
Ldl_recept_b 3303..3341 CDD:278487
LY 3327..3367 CDD:214531
LY 3374..3409 CDD:214531
LDLa 3480..3512 CDD:197566
LDLa 3521..3552 CDD:197566
LDLa 3561..3593 CDD:197566
LDLa 3602..3634 CDD:197566
LDLa 3646..3682 CDD:238060
LDLa 3689..3722 CDD:238060
LDLa 3727..3761 CDD:238060
LDLa 3766..3800 CDD:238060
LDLa 3810..3841 CDD:197566
LDLa 3854..3883 CDD:197566
LDLa 3896..3930 CDD:238060
EGF_CA 3975..4014 CDD:214542
LY 4107..4142 CDD:214531
LY 4143..4186 CDD:214531
LY 4187..4230 CDD:214531
FXa_inhibition 4306..>4324 CDD:317114
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1215
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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