DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GAPcenA and GYL1

DIOPT Version :9

Sequence 1:NP_001097549.1 Gene:GAPcenA / 38945 FlyBaseID:FBgn0035879 Length:1194 Species:Drosophila melanogaster
Sequence 2:NP_013917.1 Gene:GYL1 / 855230 SGDID:S000004804 Length:720 Species:Saccharomyces cerevisiae


Alignment Length:934 Identity:173/934 - (18%)
Similarity:323/934 - (34%) Gaps:329/934 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   217 INAPKSETEVYR----IMGELNSGS-----------KSVGLKITVSIPNCSEGLV---VLHDAES 263
            |:.|:.:.:.|.    .|...|:.|           :|:|     :..|..|.|:   :..:::|
Yeast    36 ISVPEGDEKAYSDEKVEMATTNASSNFGSNESAKDGESIG-----AFSNPHEALMQSKLREESQS 95

  Fly   264 NTIIATYEISSIILYYRGPVDTVENGCFAFTWLHGDALFQCHVFRCHIPEAVNQVSACFQKAFQT 328
            .||:.:.::|.       .::|.|:                     .:.||:.::::      ..
Yeast    96 KTILPSDDLSQ-------QLETEES---------------------KVEEALKRITS------PP 126

  Fly   329 YPPSMSCSLNSAVDMANSVTSDVSGNPLNTAGYEFIVSLEIRERVAKNSYAAVPRDRGCFKLRAN 393
            .||...|...||..:.:|:...::||                    ||..|  |.||        
Yeast   127 LPPRADCIEESASALKSSLPPVLAGN--------------------KNDQA--PLDR-------- 161

  Fly   394 TDKEVCITVKQTPSNVLQPLHIERCFGVLVAPGKLVVQKDMHLIDMHSMGYIQPGGTGVATESDS 458
                     .|.|                  |.::|..:.:||        ..|.|....::|.:
Yeast   162 ---------PQLP------------------PRQVVNAETLHL--------KAPHGNATPSKSPT 191

  Fly   459 NA--QQSSSWPYTIRAEWKAQEKAFEQLNLESSKTNLTVAVDIVMRRIQEPVRFVIETPVTIQSA 521
            :|  ..|||.|.|:..                             |||::|:             
Yeast   192 SAVGNSSSSTPPTLPP-----------------------------RRIEDPL------------- 214

  Fly   522 SEMRIMDHFMS---KRPMTLRFY---------------LHLKRTEESNWKVNSIDPSEEITEQPG 568
             ::....||::   ||.|.  ||               |:||   |.:.|:|:.:..||:     
Yeast   215 -DLAAQKHFLASTFKRNML--FYKSEDNSIKCDLDKNILNLK---EDSKKINNNEIPEEV----- 268

  Fly   569 HQQSSSLLKMGMNNLSRIVRSSSIASIEDDCPSDYSSDGDEPLLSGTGEVSKDCSQDTLDEWDPI 633
               ||..||:                                                :.::..|
Yeast   269 ---SSFWLKV------------------------------------------------IGDYQNI 282

  Fly   634 LREWDSEKRPKNLAPLVRLGVPEALREKIWQKLANVEGRMEMNDKYKILITKETKCETVIQRDIH 698
            |.. |.|.....|:    .|:|.|.|..:||.::..:.: ..:..|:..:|:      :...|:.
Yeast   283 LIN-DIETLHFQLS----RGIPAAYRLVVWQLVSYAKSK-SFDPIYETYLTE------MAPFDVQ 335

  Fly   699 RTFPAHKCFKEIGGSGQDALFKVSKAYAVHDSEVGYCQGLSFIAASLLLHMPEED--AFCVLVAL 761
            ......|...|:.......:..|.|||.:.|.|..:...:::| .:::|.:.||:  ||.:||.|
Yeast   336 EFENQLKMMDEVPSEYVKRISNVLKAYLLFDPECEFSTDIAYI-INMILDVCEEEANAFGLLVRL 399

  Fly   762 MYDYGLRDLYKAGFEVLYLRLYQLERLIKDQLPKLHEHFTACGIETHMYASQWFLTLYTARFPLC 826
            |..||||.|:......:.:..|:.:||:::..|::|.|....|:.:.|:...:|.||:..:.|..
Yeast   400 MKVYGLRLLFLPSASEIDILCYKFDRLVEEFYPEIHNHMVEKGVRSSMFLPGFFTTLFQKKLPTE 464

  Fly   827 FVFHVLDVFLLDGLPVLFQVAVTLLSICESDLRQLDFEGILKYFRVTLPK---KCRSSSQARKVM 888
            ....:.|:..|:|:..:.::..||||.....|.::.|:.:|:..:..|..   |....::...::
Yeast   465 IQPRIGDMVFLEGIDSIMRILATLLSNSRDHLLKMGFDDMLELLKSGLLDAYIKQNDGTRGDTLL 529

  Fly   889 KQACERKI------------KKLKQYEEEFLLKKQHKERLEKEAQIYENRFGEERRKMQAEIDAL 941
            ...|..|:            |.:|:|..|:    :...||:.|.::......|:...:|..:..|
Yeast   530 SNECMDKLLQDSMMKVAITPKTMKKYSSEY----EEIHRLDNEKEVQYKSITEKNLHLQKHVRKL 590

  Fly   942 NKQLTSAKERAVEKEKKHTGIIQEYKQIIQRQEQDMNTLSETLGKVMHMVSNCQDCQQQIDA--- 1003
            ....||.       .::|..|..|   :::.:....:.|:|..|..:.::    |.::::|:   
Yeast   591 ENDYTSL-------NREHVTIANE---LVKNRLNIESVLNENNGYKLQIL----DLKKKLDSEKK 641

  Fly  1004 --------GNDNAKSDDGKNRGQTDAMRNANEHPLGPLDPLNAASQRIRELELELAQAKLAQVEA 1060
                    .||..|..:...:..|..|           |.......||.|||..:.:.|.|.   
Yeast   642 KQVLGVYVPNDLKKDLEETMKKNTQVM-----------DENLKLQDRISELERLIEEIKTAN--- 692

  Fly  1061 ECKNQDLNHQLSNTLSELQTNRNS 1084
              ||        .||.|...::|:
Yeast   693 --KN--------GTLFEYSNSKNN 706

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GAPcenANP_001097549.1 PTB_Rab6GAP 204..332 CDD:269922 20/132 (15%)
DUF3694 429..523 CDD:289256 16/95 (17%)
TBC 650..858 CDD:214540 51/209 (24%)
Phage_Gp23 <914..991 CDD:287621 14/76 (18%)
GYL1NP_013917.1 COG5210 27..569 CDD:227535 140/757 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5210
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000497
OrthoInspector 1 1.000 - - mtm9196
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1488
TreeFam 00.000 Not matched by this tool.
54.810

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