DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GAPcenA and Tbc1d10b

DIOPT Version :9

Sequence 1:NP_001097549.1 Gene:GAPcenA / 38945 FlyBaseID:FBgn0035879 Length:1194 Species:Drosophila melanogaster
Sequence 2:NP_653105.3 Gene:Tbc1d10b / 68449 MGIID:1915699 Length:798 Species:Mus musculus


Alignment Length:660 Identity:155/660 - (23%)
Similarity:259/660 - (39%) Gaps:168/660 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   421 VLVAPGKLVVQKDMHLIDMHSMGYIQPGGTGVATESDSNAQQSSSWPYTIRAEWKAQEKAFEQLN 485
            ::|.||..|.......:::.:.|..:|...      ..::|.|:|.|.|      |.......|.
Mouse    34 LVVEPGPPVTTATSAPVELVAPGEARPACV------PGSSQTSASTPTT------ATSSTVVMLT 86

  Fly   486 LESS------------------KTNLTVAVDIVMRRIQEPVRFVIETPVTIQSASEMRIMDHFMS 532
            ||:|                  :|::.:|:....::.:|.....:..|.| .:.:..|:....::
Mouse    87 LEASPEAAKTQEFPAPAAETGAETSVALALGTDTQKTEEVRASPVPGPGT-PTRTPSRMAPGALT 150

  Fly   533 KRP-------------MTLRFYL------HLKRTEESNWKVNSIDPSEEITEQPGHQQ------- 571
            .:|             :|.|..:      |...|..|...|.. |||..:|..||..:       
Mouse   151 AKPPLAPKPGTTVASGVTARGGVGQVAGGHEAATSASAGSVPE-DPSGPVTGPPGTCEAPAPTPV 214

  Fly   572 -------------------SSSLLKMGM--------NNLSRIVRSSSIASIEDDCPSDYSSDGDE 609
                               |:|.|..|:        :.||.:...|.::...:..|.|.||.|.:
Mouse   215 AVVTVTPAPEPVENFQDLGSTSSLGPGISGPRGQAPDTLSYLDSVSLMSGTLESLPDDVSSMGSD 279

  Fly   610 PLLSG-----------------TGEVSKDCSQDTLDE----WDPILREWDS--EKRPKNLAPLVR 651
            ..::|                 :|.:......|...:    |..:...||.  .:|.:.:....|
Mouse   280 SEINGMALRKTDKYGFLGGSQYSGSLESSIPVDVARQRELKWLEMFSNWDKWLSRRFQKVKLRCR 344

  Fly   652 LGVPEALREKIWQKLANVEGRMEMN-DKYKIL--ITKETKCETVIQRDIHRTFPAHKCFKEIGGS 713
            .|:|.:||.|.||.|:|.:..:|.| .|::.|  ...:.|...||::|:||.||.|:.|...||.
Mouse   345 KGIPSSLRAKAWQYLSNSKELLEQNPGKFEELERAAGDPKWLDVIEKDLHRQFPFHEMFAARGGH 409

  Fly   714 GQDALFKVSKAYAVHDSEVGYCQGLSFIAASLLLHMPEEDAFCVLVALMYDYGLRDLYKAGFEVL 778
            ||..|:::.|||.::..:.||||..:.:||.||:|||.|.||..||.:...| |...|.||.|.:
Mouse   410 GQQDLYRILKAYTIYRPDEGYCQAQAPVAAVLLMHMPAEQAFWCLVQICDKY-LPGYYSAGLEAI 473

  Fly   779 YLRLYQLERLIKDQLPKLHEHFTACGIETHMYASQWFLTLYTARFPLCFVFHVLDVFLLDGLPVL 843
            .|.......|::...|..|.|.....|:..:|.::||:.::....|...|..|.|:|..:|:.::
Mouse   474 QLDGEIFFALLRRVSPLAHRHLRRQRIDPVLYMTEWFMCIFARTLPWASVLRVWDMFFCEGVKII 538

  Fly   844 FQVAVTLLSICESDLRQLDFEGILKYFRVTL--PKKCRSSSQARKVMKQACERKIKKLKQ--YEE 904
            |:||:.||                   |.||  .:|.||.....:.|:|     ::.|.|  .:|
Mouse   539 FRVALVLL-------------------RHTLGSVEKLRSCQGMYETMEQ-----LRNLPQQCMQE 579

  Fly   905 EFL-------------LKKQHKERLEK------EAQIYENR-------FGEERRKMQAEIDALNK 943
            :||             :::::..:|:|      |.|...:|       ..||||:.|..:...:.
Mouse   580 DFLVHEVTNLPVTEAWIERENAAQLKKWRETRGELQYRPSRRLHGSRAIHEERRRQQPPLGPSSS 644

  Fly   944 --QLTSAKER 951
              .|.|.|.|
Mouse   645 LLSLPSLKSR 654

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GAPcenANP_001097549.1 PTB_Rab6GAP 204..332 CDD:269922
DUF3694 429..523 CDD:289256 18/111 (16%)
TBC 650..858 CDD:214540 74/210 (35%)
Phage_Gp23 <914..991 CDD:287621 14/53 (26%)
Tbc1d10bNP_653105.3 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..79 12/56 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 118..211 17/94 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 225..250 4/24 (17%)
TBC 343..548 CDD:214540 74/224 (33%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 618..798 10/37 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5210
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

Return to query results.
Submit another query.