DRSC/TRiP Functional Genomics Resources

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Protein Alignment GAPcenA and tbc1d30

DIOPT Version :9

Sequence 1:NP_001097549.1 Gene:GAPcenA / 38945 FlyBaseID:FBgn0035879 Length:1194 Species:Drosophila melanogaster
Sequence 2:XP_021331078.1 Gene:tbc1d30 / 569334 ZFINID:ZDB-GENE-030131-2064 Length:1063 Species:Danio rerio


Alignment Length:968 Identity:185/968 - (19%)
Similarity:327/968 - (33%) Gaps:314/968 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   456 SDSNAQQSSSWPYTIRAEWKAQEKA-----FEQLNLESSKTNLTVAVDIVMRRIQEPVRFVIETP 515
            ||.:.:::||        .||.|:.     |::..|:.|:.  :..||.::..:.:.....:.  
Zfish    53 SDGDCEKTSS--------RKAHEEEKGGLYFDREELKDSRA--SSLVDCLLVELYDTYSHGVP-- 105

  Fly   516 VTIQSASEMRIMDHFMSKRPMTLRF---------------YLHLKRTEESNWKVNSIDPSEEITE 565
             .:.|::|....|.|:.:......|               ||..|..||..|.|..:.....:  
Zfish   106 -GLDSSTEASSSDAFLGRSNSGSSFLQELQEKHTRRHQVKYLAQKGPEELKWIVQEVKYRIAV-- 167

  Fly   566 QPGHQQSSSLLKMGMNNLSRIVRSSSIASIEDDCPSDYSSDGD---------------------- 608
                 ||:.|::.              |..:|.....:..:.|                      
Zfish   168 -----QSAKLVRQ--------------AKRKDRLRQKFQKNCDIVTACLQAVSQKRRVDTRLKFT 213

  Fly   609 -EPLLSGTGEVSKDCSQDTLDEWDPILREWDSEKRPKNLAPLVRLGVPEALREKIWQKLAN---- 668
             ||.|...|          ..:|      :|:.|....|.    :|:|:..|:::|..||:    
Zfish   214 IEPSLGKNG----------FQQW------YDALKAVARLP----VGIPKEWRKRVWLTLADQYLH 258

  Fly   669 -------VEGRMEMNDKYKILITKETKCETVIQRDIHRTFPAHKCFKEIGGSGQD--ALFKVSKA 724
                   ...|...||:..   ..:......|.:|:|||..:..|.:|   :.||  .|.:|..|
Zfish   259 SISIDWEKTMRFAFNDRSN---PDDDSLGIQIVKDLHRTGCSSYCGQE---AEQDRVVLKRVLLA 317

  Fly   725 YAVHDSEVGYCQGLSFIAASLLLHMP---EEDAFCVLVALMYDYGLRDLYKA-GFEVLYLRLYQL 785
            ||..:..||||||.:.:|| |:|.:.   |.||..|::.|: |..|.|.|.| ....|.:.:...
Zfish   318 YARWNKTVGYCQGFNVLAA-LILEVTEGNEGDALKVMIYLI-DKVLPDSYFANNLRALSVDMAVF 380

  Fly   786 ERLIKDQLPKLHEHF---------TACGIE----THMYASQWFLTLYTARFPLCFVFHVLDVFLL 837
            ..|::.:||:|.:|.         .|.|..    |:::..|||||::....|...|..:.|....
Zfish   381 RDLLRLKLPELSQHLHHLQKVANREAGGSYEPPLTNVFTMQWFLTMFATCLPHHTVLKIWDSVFF 445

  Fly   838 DGLPVLFQVAVTL-------LSICES----------------DLRQLDFEGIL------------ 867
            :|..:|.:||:.:       :..|::                :.:.:|...::            
Zfish   446 EGSEMLLRVALAIWAKLGERIEECQTADEFYSIMGCLTQEMLEHKLIDSNELMQTVYSMAPFPFP 510

  Fly   868 -------KY-FRVT-LPKKCRSSS-----------------QARKVMKQACERKI-----KKLKQ 901
                   || :.:| .|...|::|                 :...|....|...:     .::::
Zfish   511 QLAELREKYTYNITPFPAPVRANSSLALHGWESDDDADMDDEDSIVTALGCLGPLGGLLAPEIQR 575

  Fly   902 YEEEFLLKKQHKE-------------------RLEKEAQIYENRFGEERRKMQAEIDALNKQLTS 947
            |:..  ||.|..|                   |.|.:|.|  |....||  |..:|.||.||.:.
Zfish   576 YQRH--LKDQRAEQSCNGSNMAELSPGAVGAGRAEHQAAI--NSMMLER--MSTDISALKKQYSR 634

  Fly   948 AKERAVEKEKK---HTGIIQEYKQIIQRQEQDM-----------NTLSETLGK---VMHMV--SN 993
            .|::..::...   |||:..|.:.|...|....           :.|:..:|.   |.|::  ..
Zfish   635 IKQKQQQQAGLLYIHTGLPVEAETIEPHQSSKQQIYHTDKCPATSVLASQIGPSPVVNHLLLGRR 699

  Fly   994 CQDCQQQIDAGN-DNAKSDDGKNRGQTDAMRNANEH-------------------PLGPLDPLNA 1038
            .:.|::.:..|. .|..|....:....|.|..:..|                   .||..|.|.|
Zfish   700 PRPCERSLKNGMIHNGGSPQSHSTPLLDQMVRSRHHSPWRTHVRAHRRNIARARAQLGFDDSLEA 764

  Fly  1039 ASQRIRELELELAQAKLAQVEAECKNQDLNHQLSNT------------------LSELQTNRNSW 1085
            ...:..|.:.|.|..:..:.::|..::|   ::.||                  ||.|:.:..|.
Zfish   765 EDDQTDESKTEGASMEGEETKSEEADED---KIENTAAGGSDVSKQELQEIDRQLSALELDPESS 826

  Fly  1086 ------QPWLSKTFNSLQEKVTTRGGHRDNG--SGGPMPSFQ--SYMGQAPTTLSEASSPSGNQE 1140
                  :|.|.....|  :...|.....|..  :..|.|:.|  |:..|.|.:..:..||:..:.
Zfish   827 PDPSTPEPALDPDPQS--DPTITPEPQADPNPTTPDPDPTIQDPSFTIQNPNSTIQNPSPTIQES 889

  Fly  1141 YKT-----FAFASVGGSPKLPSKFQATKLRNSIDSLRNIVVPLDTGKTLAENLKQQLQ 1193
            ..|     |...:.....:.||           .:::|..:.:....|:.:|....:|
Zfish   890 KPTTKDSCFTIQNPNSIVQSPS-----------SAVQNPSLAIQNPNTIVQNPNSSIQ 936

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GAPcenANP_001097549.1 PTB_Rab6GAP 204..332 CDD:269922
DUF3694 429..523 CDD:289256 13/71 (18%)
TBC 650..858 CDD:214540 65/260 (25%)
Phage_Gp23 <914..991 CDD:287621 25/112 (22%)
tbc1d30XP_021331078.1 TBC 239..458 CDD:214540 64/226 (28%)
DUF4682 625..775 CDD:318030 29/149 (19%)
HrpB7 733..>820 CDD:330448 15/89 (17%)
Herpes_BLLF1 <825..>973 CDD:330317 22/125 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5210
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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