DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GAPcenA and rabgap1l2

DIOPT Version :10

Sequence 1:NP_001097549.1 Gene:GAPcenA / 38945 FlyBaseID:FBgn0035879 Length:1194 Species:Drosophila melanogaster
Sequence 2:XP_694092.1 Gene:rabgap1l2 / 565728 ZFINID:ZDB-GENE-070912-414 Length:320 Species:Danio rerio


Alignment Length:333 Identity:78/333 - (23%)
Similarity:133/333 - (39%) Gaps:84/333 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   860 QLDFEGILKYFRV-TLPKKCRSSSQARKVMKQACERKIKKLKQYEEEFLLKKQHKERLEKE---- 919
            |:..|.||....| :|||:...|.:.:  ::...|:....|.:||.|....::...|||:|    
Zfish    18 QMSEEEILASLVVESLPKQVVPSKKQK--LRDNQEQPEDPLDKYERENRKLQETSLRLEQENDDL 80

  Fly   920 -AQIYENRFGEERRKMQAE--IDALNKQLTSAKE---------RAVEKE---------------- 956
             .::..::........|.|  :|.|.|:|:..|:         |..|:|                
Zfish    81 AQKLVTSKIALRNALDQTEDQVDELTKELSKVKQLLVVTEEEKRGKEEEASQLKEMFRKELDKAE 145

  Fly   957 ---KKHTGIIQEYKQII---------QRQEQDMNTLSETLGKVMHMVSNCQDCQQQIDAGNDNAK 1009
               |:...||.:||||.         |::|.|.|     |..:...:..|:.|.:..........
Zfish   146 SDIKRSNSIIADYKQICSQLNTKLENQKEEADKN-----LAFIKSKLQECERCSRIFSVDGSIES 205

  Fly  1010 SDDGKNRGQTDAMRNANEHPLGPLDPLNAASQRIRELELELAQAKLAQVEAECKNQDLNHQLSNT 1074
            ..:.::|...|..:             .:..::::|||.||||.||..||::||.|:|.||.:..
Zfish   206 CSESEDRSAQDEAK-------------TSLREQVKELEKELAQTKLQMVESKCKIQELEHQKAVL 257

  Fly  1075 LSELQTNRNSWQPWLSKTFNSLQEKVTTRGGHRDNGSGGPMPSFQSYMGQAPTTLSEASSPSGNQ 1139
            ::|||..:|:   ||.||.:|.:   |...|             |....|..:..|..::|..:.
Zfish   258 MTELQAAKNT---WLKKTLDSFK---TAASG-------------QQSSSQTDSAWSPNNNPQSSW 303

  Fly  1140 EYKTFAFA 1147
            ..:.|::|
Zfish   304 VTRRFSWA 311

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GAPcenANP_001097549.1 PTB_Rab6GAP 204..332 CDD:269922
DUF3694 377..523 CDD:463599
TBC 650..858 CDD:214540
SMC_prok_B <876..>1087 CDD:274008 58/254 (23%)
TPH <883..>977 CDD:464007 28/137 (20%)
rabgap1l2XP_694092.1 COG2433 <14..>161 CDD:441980 33/144 (23%)
GumC <132..>289 CDD:442439 45/193 (23%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.