DRSC/TRiP Functional Genomics Resources

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Protein Alignment GAPcenA and si:dkeyp-19e1.3

DIOPT Version :9

Sequence 1:NP_001097549.1 Gene:GAPcenA / 38945 FlyBaseID:FBgn0035879 Length:1194 Species:Drosophila melanogaster
Sequence 2:XP_005170766.1 Gene:si:dkeyp-19e1.3 / 553000 ZFINID:ZDB-GENE-081104-56 Length:736 Species:Danio rerio


Alignment Length:596 Identity:135/596 - (22%)
Similarity:247/596 - (41%) Gaps:117/596 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   628 DEWDPILREWDSEKRPKNLAPLVRLGVPEALREKIWQKLANVEGRMEMN-DKYKILITKETKCET 691
            ::|..::::|:.....:.:...|..|:|..||.:.|..|.:||...:.| .||:.:..:..:..|
Zfish    74 EKWIKMVKKWEKYHNSEKMMKRVYKGIPLKLRGQAWALLLDVEKVKQANFRKYEKMKEQAKRYST 138

  Fly   692 VIQR---DIHRTFPAHKCFKEIGGSGQDALFKVSKAYAVHDSEVGYCQGLSFIAASLLLHMPEED 753
            .|::   |::|||..|..|.|..|..|.|||.|..||:|:::||.||||:|.|||.||::|.|||
Zfish   139 EIKQIDLDVNRTFRNHIMFMERFGVKQQALFHVLAAYSVYNTEVSYCQGMSQIAAILLMYMNEED 203

  Fly   754 AFCVLVALMYD--YGLRDLYKAGFEVLYLRLYQLERLIKDQLPKLHEHFTACGIETHMYASQWFL 816
            ||..|..|:.:  :.:...:..||..|:......::::...|.||..|.....:.|.:|.::|||
Zfish   204 AFWALSQLLTNQKHAMHGFFIPGFPKLHRFQVHHDKILSKLLSKLRNHLEKEQMSTGIYTTKWFL 268

  Fly   817 TLYTARFPLCFVFHVLDVFLLDGLPVLFQVAVTLLSICESDLRQLDFEGILKYFRVTLPKKCRSS 881
            ..:..|.|......:.|:::|:|..||..:|.|||.:.:..|.:|..|.:.::.:   .:...|.
Zfish   269 QCFIDRTPFTLTLRLWDIYILEGEKVLTAMAYTLLKLHKKHLLKLSLEDLREFLQ---ERTASSF 330

  Fly   882 SQARKVMKQACERKIKKLKQYE---------EEFLLKKQHKERLEKEAQIYENRFGEERRKMQAE 937
            :.:..|:.:..:..:.:|::.:         :||......:|||.:...:.:.    ||..:.:.
Zfish   331 NMSDDVVIEHLQSSMSELRRMKLDLPPPGKGDEFPKIPLGEERLIELLSVIQT----ERVPLPSA 391

  Fly   938 IDALNKQLTSAKERAVEKEKKHTGIIQEYKQIIQRQEQDMNTLSETLGKVMHMVSNCQDCQQQID 1002
              |.|.|..|                       :.|.:|..:.::...|.:..:::.....||..
Zfish   392 --AHNNQAAS-----------------------KLQTEDTTSHNQCSNKPIPRITSSSSFSQQSQ 431

  Fly  1003 AGNDNAKSD---DGKNRGQTDAMRNANEHPLGPLDPLNAASQRIRELELELAQAKLAQVEAECKN 1064
            ..:.::.|.   :..:|.|..|...|....|.| :|.:.:::.:             .::.||.:
Zfish   432 LPSSSSLSQPPPEDSDRTQESAPVQAQSQVLQP-EPTSRSTEAL-------------SLKDECVS 482

  Fly  1065 QDLNHQLSNTLSELQTNRNSW----QPWLSK-----TFNSLQEKVTTRGGHRDNGSGGPMPSFQS 1120
            :.|     :.:||      .|    ||.::.     :|| |.|.......:.|.|...|...|..
Zfish   483 RPL-----SGVSE------DWPPPYQPPITDSSSIVSFN-LPELPPPPLPYTDQGVELPEDPFYI 535

  Fly  1121 YMGQAPTTLSE---------ASSPSGNQEYKTFAFASVGGSPKLPSKFQATKLRNSIDSLRNIVV 1176
            .....|..:::         :||||..:.|:..            |||..           |:.|
Zfish   536 PPLPPPPPITQPLDLIVEDPSSSPSLYRSYRQL------------SKFPI-----------NLYV 577

  Fly  1177 PLDTGKTLAEN 1187
            |..:|.....|
Zfish   578 PPSSGDRRPSN 588

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GAPcenANP_001097549.1 PTB_Rab6GAP 204..332 CDD:269922
DUF3694 429..523 CDD:289256
TBC 650..858 CDD:214540 73/213 (34%)
Phage_Gp23 <914..991 CDD:287621 12/76 (16%)
si:dkeyp-19e1.3XP_005170766.1 TBC 96..301 CDD:214540 70/204 (34%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5210
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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