DRSC/TRiP Functional Genomics Resources

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Protein Alignment GAPcenA and Tbc1d8

DIOPT Version :9

Sequence 1:NP_001097549.1 Gene:GAPcenA / 38945 FlyBaseID:FBgn0035879 Length:1194 Species:Drosophila melanogaster
Sequence 2:XP_017177250.1 Gene:Tbc1d8 / 54610 MGIID:1927225 Length:1160 Species:Mus musculus


Alignment Length:828 Identity:190/828 - (22%)
Similarity:313/828 - (37%) Gaps:211/828 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   511 VIETPVTIQSASEMRIMDHFMSKRPMTLR-FYLHLKRTEESNWKVNSIDPSEEITEQPGHQQSSS 574
            ::..|:.:...|:|......:..|...:. ..|.||:...::.......||::....|.. .|:|
Mouse   372 LLPNPIIVSIRSKMAFQFIELKDRENLVEGLLLRLKQVHANHPVHYETSPSDDDMASPVF-YSAS 435

  Fly   575 LLKMGMNNLSRIVRSSSIASIEDDCPSDYSSDGDEPL---LSGTGEVSKDC----SQDTLDEWDP 632
            :......:| .:|.|.|....|:..|..:    .|||   ...:|..|.|.    .|..:..|:.
Mouse   436 ICTDKFGDL-EMVASQSSEEREEKRPLPH----PEPLTAVFQQSGSQSPDSRLSREQIKISLWND 495

  Fly   633 ILREWDSEK---RPKNLAPLVRLGVPEALREKIWQKLANVEGRMEMNDKYK-----------ILI 683
            ...|:....   |.:.:..||.:|:||:||.::|...::....:..:..|.           .|:
Mouse   496 HFVEYGRTVCMFRTEKIRKLVAMGIPESLRGRLWLLFSDAVTDLASHPGYYGNLVEQSLGRCCLV 560

  Fly   684 TKETKCETVIQRDIHRTFPAHKCFKEIGGSGQDALFKVSKAYAVHDSEVGYCQGLSFIAASLLLH 748
            |:|      |:||:||:.|.|..|:  ..:|..||.:|..|||..:.::||||.::.:.:.|||:
Mouse   561 TEE------IERDLHRSLPEHPAFQ--NETGIAALRRVLTAYAHRNPKIGYCQSMNILTSVLLLY 617

  Fly   749 MPEEDAFCVLVA----LMYDYGLRDLYKAGFEVLYLRLYQ--LERLIKDQLPKLHEHFTACGIET 807
            ..||:||.:|||    ::.||       ....|:..::.|  .|.|||:|||:|.||.:......
Mouse   618 AKEEEAFWLLVAVCERMLPDY-------FNHRVIGAQVDQSVFEELIKEQLPELAEHMSDLSALA 675

  Fly   808 HMYASQWFLTLYTARFPLCFVFHVLDVFLLDGLPVLFQVAVTLL-----SICESD---------L 858
            .:..| |||||:.:..||....||:|.|..||:..:||:.:.:|     .:|.|.         .
Mouse   676 SISLS-WFLTLFLSIMPLESAVHVVDCFFYDGIKAIFQLGLAVLEANAEELCSSKDDGQALMVLS 739

  Fly   859 RQLD------------------FEGILKYFRVT-LPKKCRSS----SQARKVMKQ---------- 890
            |.||                  |....:.:.|| :....|.|    :||..|..|          
Mouse   740 RFLDHIKNEDSPGPPIGSHHAFFSDDQEPYPVTDIADLIRDSYELWTQAVPVSMQKFGNQSVEQI 804

  Fly   891 ---ACERKIKKLKQYEEEFLLKKQHKERL---------EKEAQIYE--------NRFGEERRKM- 934
               .|:.:|:.|:.:|:   ..||:..|:         |...::|:        :.:.|..|.| 
Mouse   805 EHLRCKHRIRVLQGHED---TTKQNVLRVVIPEVSILPEDLEELYDLFKRAHMMSCYWEHHRPMA 866

  Fly   935 -----------QAEIDALN----KQLTSAKERAVEKEKKHTGIIQEYKQIIQRQEQDMNTLSETL 984
                       |..|||..    .||.|.....|     ||.|:.|  ::.:..:.:|:.|.|  
Mouse   867 LRHDPSRPYAEQYRIDARQFAHLFQLVSPWTCGV-----HTEILAE--RLFRLLDDNMDQLIE-- 922

  Fly   985 GKVMHMVSNCQDCQQQIDAGNDNAK-----------SDDGKNRGQTDAMRN---ANEHPL----- 1030
               ....::|.|....   |..|.|           :....:|.....::|   :...||     
Mouse   923 ---FKAFTSCLDIMYN---GEMNEKIKLLYRLHIPPALTENDRDSQSPLKNPLLSTSRPLVLGKP 981

  Fly  1031 --GPLDPLNAASQRIREL-----ELELAQAKLAQVE--AECKNQDLNHQLSNTLSELQTNRNSWQ 1086
              ..:|......|.|::|     ::|....|::|.|  ..||.      |.:...|.....:.:|
Mouse   982 NGDTIDYQKQLKQMIKDLAKEKDKMEKELPKMSQREFIQFCKT------LYSMFHEDPEENDLYQ 1040

  Fly  1087 PWLSKTFNSLQEKVTTRGGHRDNGSGGPMPSFQSYMGQAPTTLSEASSPSGNQEYKTFAFASVGG 1151
            ...:.|...||   ....|.|.:.||......:.....||   .|..|          .||..| 
Mouse  1041 AIATVTTLLLQ---IGEVGQRGSSSGSCSQECEEPQASAP---PEQDS----------VFAEAG- 1088

  Fly  1152 SPKLPSKFQATKLRNSIDSLRNIVVPLDTGKTLAE------NLKQQLQ 1193
              |.|..|..|:...:: ||.:|:..|.|.::|..      |:|.:|:
Mouse  1089 --KSPQAFPETEGDWTV-SLEHILASLLTEQSLVNFFEKPLNIKSKLE 1133

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GAPcenANP_001097549.1 PTB_Rab6GAP 204..332 CDD:269922
DUF3694 429..523 CDD:289256 1/11 (9%)
TBC 650..858 CDD:214540 73/238 (31%)
Phage_Gp23 <914..991 CDD:287621 21/109 (19%)
Tbc1d8XP_017177250.1 PH-GRAM1_TBC1D8 171..269 CDD:270156
PH-GRAM2_TBC1D8 311..406 CDD:270160 5/33 (15%)
TBC 519..725 CDD:214540 70/221 (32%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5210
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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