DRSC/TRiP Functional Genomics Resources

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Protein Alignment GAPcenA and CG5745

DIOPT Version :9

Sequence 1:NP_001097549.1 Gene:GAPcenA / 38945 FlyBaseID:FBgn0035879 Length:1194 Species:Drosophila melanogaster
Sequence 2:NP_650941.3 Gene:CG5745 / 42498 FlyBaseID:FBgn0038855 Length:546 Species:Drosophila melanogaster


Alignment Length:427 Identity:94/427 - (22%)
Similarity:167/427 - (39%) Gaps:100/427 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   543 HLKRTEESNWKVNSIDPSEEITEQPGHQQSSSLLKMGMNNLSRIVRSSSIASIEDDCPSDYSS-- 605
            |..|.......:|.|:......:  .|..|.|..:.|.:    :|..||  |..|||..|..|  
  Fly   132 HFSRQVSQTVALNVIETHSRSNQ--NHNASRSANESGAD----LVPVSS--SSTDDCKEDRRSLP 188

  Fly   606 DGDE-----------PLLSGTGEVSKDCSQDT-----LDEWDPILREWDSEKRPKNLAPLVRL-- 652
            |.:|           |.|.   ::|.:| ||:     ::::..:|   ||.:  .:|..|.::  
  Fly   189 DSNENRSRLRNYPGRPQLQ---KISSNC-QDSEYETKIEKFQVVL---DSPQ--LDLVALKKISW 244

  Fly   653 -GVPEALREKIWQKLA-----NVEGRMEM------------NDKYKILITKETKCETV--IQRDI 697
             |||..:|...|:.|:     :.|.||.:            ::.:::....||:.:|.  |..|:
  Fly   245 SGVPRKMRAVSWRLLSKYLPPSSERRMAVLESKRQGYQDLRHNYFRVDSQDETQQDTYRQIHIDV 309

  Fly   698 HRTFPAHKCFKEIGGSGQDALFKVSKAYAVHDSEVGYCQGLS---------FIAASL-------- 745
            .|..|....|::  ...|:...::...:|:.....||.||::         |:..:|        
  Fly   310 PRMNPQIPLFQQ--QLVQEMFERILFIWAIRHPASGYVQGINDLVTPFFIVFLQEALTPNTDLEK 372

  Fly   746 --LLHMPEE-------DAFCVLVALMYDYGLRDLYKAGFEVLYLRLYQLERLIKDQLPK----LH 797
              :..:|||       |:|..|...:      |..:..:....|.:.:....:||.:.:    ||
  Fly   373 YDMSTLPEETRNIIEADSFWCLSKFL------DCIQDNYIFAQLGIQEKVNQLKDLIQRIDVNLH 431

  Fly   798 EHFTACGIETHMYASQWFLTLYTARFPLCFVFHVLDVFLL--DGLPV--LFQVAVTLLSICESDL 858
            .|..|.|::...::.:|...|.|...||.....:.|.:|.  ||..:  |:..|..||...|..:
  Fly   432 RHLQAHGVDYLQFSFRWMNNLLTRELPLHCTIRLWDTYLAESDGFALFHLYVCAAFLLHWKEQLM 496

  Fly   859 RQLDFEGILKYFRVTLPKKCRSSSQARKVMKQACERK 895
            :|.||:|::...: .||....|..|...::.:|...|
  Fly   497 QQNDFQGLMLLLQ-NLPTHNWSDRQINVLLAEAFRLK 532

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GAPcenANP_001097549.1 PTB_Rab6GAP 204..332 CDD:269922
DUF3694 429..523 CDD:289256
TBC 650..858 CDD:214540 54/263 (21%)
Phage_Gp23 <914..991 CDD:287621
CG5745NP_650941.3 TBC 243..496 CDD:214540 54/260 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45456593
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR22957
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

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