DRSC/TRiP Functional Genomics Resources

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Protein Alignment GAPcenA and TBC1D5

DIOPT Version :9

Sequence 1:NP_001097549.1 Gene:GAPcenA / 38945 FlyBaseID:FBgn0035879 Length:1194 Species:Drosophila melanogaster
Sequence 2:NP_731780.1 Gene:TBC1D5 / 41628 FlyBaseID:FBgn0038129 Length:654 Species:Drosophila melanogaster


Alignment Length:726 Identity:123/726 - (16%)
Similarity:206/726 - (28%) Gaps:301/726 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly   629 EWDPILREWDSEKRPKNLAPLVRLGVPEALREKI--------------WQKLANV---------E 670
            ||..:|...|::              ||:||:..              |..|..|         .
  Fly    47 EWQVLLENLDAD--------------PESLRQSAFAGDLKMSKFRSVHWALLLRVLTSEHRSWTS 97

  Fly   671 GRMEMN---DKYKILITKE-----TKCE----------------------TVIQRDIHRTFPAHK 705
            .|::..   ||::....:.     ..|.                      .||::|:.||||...
  Fly    98 QRLQQRVRYDKFRADYVRNPHQLAVDCNDDPLSQSTQSVWNQYFSDQDLFAVIRQDVVRTFPGVD 162

  Fly   706 CFKEIGGSGQDALFKVSKAYAVHDSEVGYCQGLSFIAASL----------LLHMP---------- 750
            .|::  ...|:|:..:...||.....:.|.||:..|.|.:          |||..          
  Fly   163 FFRK--PLVQNAMVNILFYYAREHPYMCYRQGMHEILAPIIFVVYSDHQSLLHFSELAKTDINPT 225

  Fly   751 ----------EEDAFCVLVALMYD----YGLRDLY-------------------KAGFEVLYLRL 782
                      |.|.:.:...||..    |.:.:|.                   ....||:....
  Fly   226 LLDVLDPAYLEADTYSLFSRLMASVESYYRVSNLVSTPGGHIEQRAESPGDNETSTEAEVIGQLN 290

  Fly   783 YQLERLIKDQLPKLHEHFTACGIETHMYASQWFLTLYTARFPLCFVFHVLDVFLLDG----LPVL 843
            :..::::..|...||.:.....|..|::..:|...|:...|.|..:..:.|....|.    ||..
  Fly   291 FIRDKILAKQDQHLHHYLQKMEIPLHIFGIRWLRLLFGREFMLLDLLLLWDAIFADSDRFDLPNY 355

  Fly   844 FQVAV-------TLLSICESDLRQL-------DFEGILKYFRVTL-PKK---------CRS---S 881
            ..||:       .|||...:.|..|       |...:|::....| ||:         |.|   |
  Fly   356 ILVAMLVHIRDKLLLSDYTTSLTYLMRYPNNVDVHLVLRHALFMLNPKQFEYPPNAFTCVSFANS 420

  Fly   882 SQARKVMKQACERKIKKLKQYEEEFLLKKQHKERLEKEAQIYENRFGEERRKMQAEIDALNKQLT 946
            |..:.|...|.:|.                              |...|...|......:::|:|
  Fly   421 SADKDVPPPAGQRP------------------------------RTNSENSSMATSGSQIDRQIT 455

  Fly   947 SAKER------AVEK-EKKH----TGIIQEYKQIIQRQEQDMNT--------LSETLGKVMHMVS 992
            ..:||      |:.| :..|    .|.::...::::.:.::..|        |...|..|.|.|.
  Fly   456 FMQERNAADSSALAKLQDTHRVAMDGYLENSPELLRLELKNAQTVIKIARSKLQSYLSTVRHHVG 520

  Fly   993 NCQDCQQQIDAGNDNAKSDDGKNRGQTDAMRNANEHPLGPLDPLNAASQRIRELELELAQAKLAQ 1057
                  :|.:...:..::.||                                            
  Fly   521 ------KQANGSEELGRTLDG-------------------------------------------- 535

  Fly  1058 VEAECKNQDLN-----HQLSNTLSE-LQTNRNSWQPWLSKTFNSLQEKVTTRGGHRDNGSGGPMP 1116
            :|..|...|:.     ||.|..:.: |:.|.       .|..|::              |..|.|
  Fly   536 IEELCSFLDVKFMFPLHQRSAPIDQALEANE-------QKQLNTV--------------SKPPKP 579

  Fly  1117 SFQSYMGQAPTTLSEASSPSGNQEYKTFAFASVGGSPKLPSKFQATKLRNSIDSLRNIVVPLDT- 1180
            :..|....||..||                 :.||.....:.|..:.:|..:..||.|.:...| 
  Fly   580 TASSTPANAPAALS-----------------ATGGYQMPENAFMHSSMRRLLGELREIELSTITS 627

  Fly  1181 ----GKTLAEN 1187
                |..:.:|
  Fly   628 DEKPGNAVVQN 638

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GAPcenANP_001097549.1 PTB_Rab6GAP 204..332 CDD:269922
DUF3694 429..523 CDD:289256
TBC 650..858 CDD:214540 57/324 (18%)
Phage_Gp23 <914..991 CDD:287621 16/95 (17%)
TBC1D5NP_731780.1 TBC <150..369 CDD:214540 42/220 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45456532
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5210
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR22957
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.930

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