DRSC/TRiP Functional Genomics Resources

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Protein Alignment GAPcenA and tbc1d5

DIOPT Version :9

Sequence 1:NP_001097549.1 Gene:GAPcenA / 38945 FlyBaseID:FBgn0035879 Length:1194 Species:Drosophila melanogaster
Sequence 2:NP_001315187.1 Gene:tbc1d5 / 393583 ZFINID:ZDB-GENE-040426-1197 Length:863 Species:Danio rerio


Alignment Length:829 Identity:145/829 - (17%)
Similarity:252/829 - (30%) Gaps:343/829 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly   635 REWDSEKRPKNLAPLVR-LGVPEALREK-----IWQKLANV-------------EGRMEMNDKYK 680
            :|||...:..|..|.:| .|:...||..     .|:...:|             |.|.:.....:
Zfish    49 KEWDDLFQNSNYLPRIRQAGINGRLRSSRFRSVCWKLYLDVLPEDKAQWISRTKEHRAQYEKIKE 113

  Fly   681 ILITKETKC-----------------------------ETVIQRDIHRTFPAHKCFKE--IGGSG 714
            :.||...|.                             ..:|::|:.||||....|:|  :....
Zfish   114 MHITNPRKAAGQQDLVVNNPLSQDEGSLWNKFFQDKELRGMIKQDVLRTFPEMLYFQEEDVRTKM 178

  Fly   715 QDALFKVSKAYAVHDSEVGYCQGLSFIAASL--LLH--------------------------MPE 751
            .|.||    .||..:.::.|.||:..:.|.:  :||                          ..|
Zfish   179 TDILF----CYARENEQLLYKQGMHELLAPIVFVLHCDHQAFQHASETANPSDEMKVLLDPKFHE 239

  Fly   752 EDAFCVLVALM------YDYGLRDLYKAGFEVL----YLR----------LYQLERLIKDQLPKL 796
            .||:.:...||      :....|::.|...|:|    :.|          :.::.| |:|||.|.
Zfish   240 HDAYTMFSLLMETAEPWFSSFEREVRKGKEEMLTSIPFARPQDSGPSVAIVTKVNR-IQDQLIKK 303

  Fly   797 HE-----HFTACGIETHMYASQWFLTLYTARFPL--------------------CFVFHVLDVFL 836
            |:     |.....|...:|..:|...|:...|||                    .:||..:.:::
Zfish   304 HDIELYMHLNRLEIAPQIYGIRWVRLLFGREFPLQDLLVVWDALFADSITLDLVDYVFVAMLLYI 368

  Fly   837 LDGLPVL-FQVAVTLLSICE--SDLRQL-------------------DFEGILKYFR---VTLPK 876
            .|.|... ||..:.||....  .|:..|                   .|:..|.|::   ..|..
Zfish   369 RDALIASNFQTCLGLLMHYPPIGDIHSLLLKALFLRDPKNNPRPVNYQFQQNLDYYKTRGADLVN 433

  Fly   877 KCRSSSQA----------------RKVM---------------------------------KQAC 892
            |.|:|::|                ||::                                 ..:|
Zfish   434 KTRASTKAAPLNINKVSSSLLNFGRKLIAPMGGGSGGISPINSEVLSAPPLPAPASRPLTEAPSC 498

  Fly   893 ERKIKKLKQYEEEFLLKKQHKERLEKE----------------------AQIYENRFGEERRKMQ 935
            ...:.  .|.:.:.|.:.||:.||.|.                      |||:.:..|...|.:.
Zfish   499 PAPLN--TQMKSQPLPQTQHQHRLLKSESMPVHLSKDVGSCGASQISLPAQIHSDITGHSSRTVS 561

  Fly   936 A--EIDAL-------------------NKQLTSAKERAVEKE----------------KKHTGII 963
            :  ..::|                   :...:|....|.:|:                ||....:
Zfish   562 SSPSTESLSCSRDHAMSSPPLPVSRGRDSSTSSPPSSATKKDSFFNISRSRSHSKTINKKDAEEL 626

  Fly   964 QEYKQIIQRQEQDMNTLSETLGKVMHM-VSNCQD--CQQQIDAGNDNAKSDDGKNRGQTDAMRNA 1025
            :.....:|.|..|:..:|:...|:|:. :...||  .|:.::      |.|:             
Zfish   627 EAQVSFLQGQINDLEAMSKYCAKMMNAHIGKIQDVILQEHLE------KEDE------------- 672

  Fly  1026 NEHPLGPLDPLNAASQRIRELELELAQAKLAQVEAE------------CKNQ--------DLNHQ 1070
                  .|..| |..::|:::.....:...:|:|:|            |.:|        |..||
Zfish   673 ------VLVSL-AGLKQIKDILKGALRFNQSQLESEDNEEITIADDHYCSSQYSTLKYYSDFVHQ 730

  Fly  1071 LSNTLSELQTNRNSWQPW-----------LSKTFNSLQEKVTTRGGHRDNGSGGPM-PSFQSYMG 1123
            .::..::...:|...|..           ..:....::|||.|.       ...|| |..|:..|
Zfish   731 SADNDADADASRQQTQQLDDHEEVDGMADKEEELQEVEEKVLTT-------KNVPMTPELQASEG 788

  Fly  1124 Q---APTTLSEASSPSGNQEYKTFAFASVGGSPKLPSKFQATKLRNSID 1169
            :   ....:|:...||||:|.        .|:|..| .|:..:..|..|
Zfish   789 RNWDDYILVSKDGEPSGNEEQ--------SGTPTAP-LFKNVRALNKAD 828

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GAPcenANP_001097549.1 PTB_Rab6GAP 204..332 CDD:269922
DUF3694 429..523 CDD:289256
TBC 650..858 CDD:214540 63/333 (19%)
Phage_Gp23 <914..991 CDD:287621 20/136 (15%)
tbc1d5NP_001315187.1 TBC 71..373 CDD:214540 56/306 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5210
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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