DRSC/TRiP Functional Genomics Resources

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Protein Alignment GAPcenA and Usp6nl

DIOPT Version :10

Sequence 1:NP_001097549.1 Gene:GAPcenA / 38945 FlyBaseID:FBgn0035879 Length:1194 Species:Drosophila melanogaster
Sequence 2:XP_006254294.1 Gene:Usp6nl / 291309 RGDID:1311786 Length:833 Species:Rattus norvegicus


Alignment Length:596 Identity:135/596 - (22%)
Similarity:243/596 - (40%) Gaps:108/596 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   610 PLLSGTGEVSKDCSQDTLDEWDPILREWDSEKRPKNLAPLVRLGVPEALREKIWQKLANV-EGRM 673
            |..:...:..|....:...:|..:|:.|:..|..:.....:..|:|..||.::|..|..: :.:.
  Rat    74 PYPNAAADRQKQLEIERTSKWLKMLKRWERYKNTEKFHRRIYKGIPLQLRGEVWALLLEIPKMKE 138

  Fly   674 EMNDKYKILITKETKCETVIQR---DIHRTFPAHKCFKEIGGSGQDALFKVSKAYAVHDSEVGYC 735
            |..|.|..|..:...|...|::   |::|||..|..|::..|..|.:||.|..||:::::|||||
  Rat   139 ETRDLYSKLKHRARGCSPDIRQIDLDVNRTFRDHIMFRDRYGVKQQSLFHVLAAYSIYNTEVGYC 203

  Fly   736 QGLSFIAASLLLHMPEEDAFCVLVALMY--DYGLRDLYKAGFEVLYLRLYQLERLIKDQLPKLHE 798
            ||:|.|.|.||::|.|||||..||.|..  .:.:...:..||..|.......|:::...|.||.:
  Rat   204 QGMSQITALLLMYMNEEDAFWALVKLFSGPKHAMHGFFVQGFPKLLRFQEHHEKILNKFLSKLKQ 268

  Fly   799 HFTACGIETHMYASQWFLTLYTARFPLCFVFHVLDVFLLDGLPVLFQVAVTLLSICESDLRQLDF 863
            |..:..|.|..|..:||...:..|.|......:.|:::.:|..:|..::.|:|.:....|.:|..
  Rat   269 HLDSQEIYTSFYTMKWFFQCFLDRTPFRLNLRIWDIYIFEGERILTAMSYTILKLHRKHLMKLSM 333

  Fly   864 EGILKYFRVTLPKKCRSSSQARKVMKQACERKIKKLKQYEEEFLLKKQHKERLE-KEAQIYENRF 927
            |.::::.:.||.|..                      .:|::|::::......| |.|::.....
  Rat   334 EELVEFLQETLAKDF----------------------FFEDDFVIEQLQVSMTELKRAKLDLPEP 376

  Fly   928 GEERRKMQAEIDALNKQLT---SAKERAVEKEKKHTGIIQEYKQIIQRQE--------------Q 975
            |:|....:..:..|..:.|   |..:|:|.:..         .:|..|:|              .
  Rat   377 GKEDEYPRKPLGQLPPEYTNHLSNGQRSVGRPS---------PKISSRREDGSPHKAHEHSPAHH 432

  Fly   976 DMNTLSETLGKVMHMVSNCQDCQQQIDAGNDNAK-------------SDDGKNRGQTDAMRNANE 1027
            ..|...|.:|         |..::.:|.|:.|.|             .|:.|:.....|.:|:| 
  Rat   433 SRNGTPERVG---------QSRRKSVDEGSKNLKQEADFQRKPSSGTQDNSKHYNHATANQNSN- 487

  Fly  1028 HPLGPLDPLNAASQRIRELEL----ELAQAKLAQVEAECKNQDLNHQLSNTLSELQTNRNSWQPW 1088
                       |...||:..:    :.::|...:..|:...:..:|.:...||....  :|.:..
  Rat   488 -----------ALSNIRKEFVPKWRKPSEASAIERTAKYAIEGRSHSVFPALSVAVP--SSAETR 539

  Fly  1089 LSKTFNSLQEKVTTRGGHRDNGSGGP----MPSFQSYMGQAPTTLSEASSPSGNQEYKTFAFASV 1149
            ||   ||.|:.....||..:.||...    :|..:|..|.:.....|.:.|...:::     :..
  Rat   540 LS---NSRQKMKAFDGGEGNRGSNASQYDNVPGSESEPGASAEEGPERTHPHSPRKH-----SEP 596

  Fly  1150 GGSP-KLPSKF 1159
            ..|| |:|:||
  Rat   597 SPSPSKVPNKF 607

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GAPcenANP_001097549.1 PTB_Rab6GAP 204..332 CDD:269922
DUF3694 377..523 CDD:463599
TBC 650..858 CDD:214540 66/213 (31%)
SMC_prok_B <876..>1087 CDD:274008 38/245 (16%)
TPH <883..>977 CDD:464007 15/111 (14%)
Usp6nlXP_006254294.1 TBC 114..329 CDD:214540 66/214 (31%)
PHA03307 383..>738 CDD:223039 50/265 (19%)
Blue background indicates that the domain is not in the aligned region.

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