DRSC/TRiP Functional Genomics Resources

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Protein Alignment GAPcenA and TBC1D28

DIOPT Version :10

Sequence 1:NP_001097549.1 Gene:GAPcenA / 38945 FlyBaseID:FBgn0035879 Length:1194 Species:Drosophila melanogaster
Sequence 2:XP_016879905.1 Gene:TBC1D28 / 254272 HGNCID:26858 Length:350 Species:Homo sapiens


Alignment Length:166 Identity:36/166 - (21%)
Similarity:64/166 - (38%) Gaps:24/166 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   568 GHQQSSSLLKMGMNNLSRIVRSSSIASIEDDCPSDYSSDGDEPLLSGTGEVSKDCSQDTLDEWDP 632
            ||:|..  ::...|||. ||....:                 |.:|......:.......::|..
Human    77 GHEQVD--VRKYTNNLG-IVHEMEL-----------------PRVSALEVKQRRKESKRTNKWQK 121

  Fly   633 ILREWDSEKRPKNLAPLVRLGVPEALREKIWQKLANVEGRMEMN-DKYKILITKETKCETV---I 693
            :|.:|...:..|.|:..|...:|.|:|.:....|.:::.....| .|||::..|..:...:   |
Human   122 MLADWTKYRSTKKLSQRVCKVIPLAVRGRALSLLLDIDKIKSQNPGKYKVMKEKGKRSSRIIHCI 186

  Fly   694 QRDIHRTFPAHKCFKEIGGSGQDALFKVSKAYAVHD 729
            |.|:..|...|..|.:..|..|..|..:..||:.::
Human   187 QLDVSHTLQKHMMFIQRFGVKQQELCDILVAYSAYN 222

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GAPcenANP_001097549.1 PTB_Rab6GAP 204..332 CDD:269922
DUF3694 377..523 CDD:463599
TBC 650..858 CDD:214540 21/84 (25%)
SMC_prok_B <876..>1087 CDD:274008
TPH <883..>977 CDD:464007
TBC1D28XP_016879905.1 COG5210 2..>230 CDD:227535 36/166 (22%)
TBC 143..>224 CDD:214540 20/80 (25%)
Blue background indicates that the domain is not in the aligned region.

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