DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GAPcenA and Tbc1d8b

DIOPT Version :10

Sequence 1:NP_001097549.1 Gene:GAPcenA / 38945 FlyBaseID:FBgn0035879 Length:1194 Species:Drosophila melanogaster
Sequence 2:NP_001074968.1 Gene:Tbc1d8b / 245638 MGIID:1918101 Length:1114 Species:Mus musculus


Alignment Length:530 Identity:130/530 - (24%)
Similarity:216/530 - (40%) Gaps:138/530 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   538 LRFYLHLKRTEESNWKV-NSI--DPSEEITEQPGHQQSSSLLKMGMNNLSRIVRSSSIASIEDDC 599
            ||..|.:.:|::||..| .||  ..:...:|....:|..:.|::          ....||.:||.
Mouse   343 LREVLAIDKTDDSNRSVIISIKGKTAFRFSELKDFEQLVAKLRL----------KCRAASTQDDV 397

  Fly   600 PSD--YSSDG--------DEPLLSGTGEVSKDCSQ----------------DTLD---------- 628
            .::  .|||.        ::||     ...|:||:                :.||          
Mouse   398 STEVAVSSDSTGPSENFEEQPL-----TCPKECSKTVNTEALMTVFHPQNLENLDSKMLKEKMKE 457

  Fly   629 -EWDPILREWD---SEKRPKNLAPLVRLGVPEALREKIWQKLANVEGRMEMNDKY---------- 679
             .|:.:..|..   |..|.|....||..|:||.||.::|...:.....|..|..|          
Mouse   458 QSWNILFSECGRGVSMFRTKKTRDLVVRGIPETLRGELWMLFSGAVNDMATNPGYYAEVVEQSLG 522

  Fly   680 -KILITKETKCETVIQRDIHRTFPAHKCFKEIGGSGQDALFKVSKAYAVHDSEVGYCQGLSFIAA 743
             ..|.|:|      |:||:.|:.|.|..|:  ..:|..||.:|..|||..:.::||||.::.:.:
Mouse   523 TSNLATEE------IERDLRRSLPEHPAFQ--SDTGISALRRVLTAYAYRNPKIGYCQAMNILTS 579

  Fly   744 SLLLHMPEEDAFCVLVA----LMYDYGLRDLYKAGFEVLYLRLYQLERLIKDQLPKLHEHFTACG 804
            .|||:..||:||.:|||    ::.||..|.:..|..:...     .|.||:|.||:|.:|.|   
Mouse   580 VLLLYAKEEEAFWLLVAVCERMLPDYFNRRIIGALVDQAV-----FEELIRDHLPQLTDHMT--- 636

  Fly   805 IETHMYAS---QWFLTLYTARFPLCFVFHVLDVFLLDGLPVLFQVAVTLLSICESDLRQLDFEGI 866
             :...::|   .|||||:.:..|:....:|:|.|..||:..:.|:.   |:|.:.:|.:|     
Mouse   637 -DMTFFSSVSLSWFLTLFISVLPIESAVNVVDCFFYDGIKAILQLG---LAILDYNLDKL----- 692

  Fly   867 LKYFRVTLPKKCRSSSQARKVMKQACERKIKKLKQYEEEFLLKKQHKERLEKEAQIYENRFGEER 931
                     ..|:..::|...:.:..:..|.|              ...|....|...|...|:.
Mouse   693 ---------LTCKDDAEAVTALNRFFDNVINK--------------DSPLPSNVQQGSNISNEKS 734

  Fly   932 RKMQAEIDALNKQLTSAKERAVEKEKKHTGIIQEYKQIIQRQEQDMNTLSETLGK-VMHMVSNCQ 995
            ...:.:|..|.|: ::.|..::..|..|:...:....:||       ||.||..: |:.:||  |
Mouse   735 DHTKVDITDLIKE-SNEKYGSIRYEDIHSMRCRNRLYVIQ-------TLEETTKQNVLRVVS--Q 789

  Fly   996 DCQ---QQID 1002
            |.:   |::|
Mouse   790 DVKMSLQELD 799

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GAPcenANP_001097549.1 PTB_Rab6GAP 204..332 CDD:269922
DUF3694 377..523 CDD:463599
TBC 650..858 CDD:214540 69/225 (31%)
SMC_prok_B <876..>1087 CDD:274008 27/131 (21%)
TPH <883..>977 CDD:464007 15/93 (16%)
Tbc1d8bNP_001074968.1 PH-GRAM1_TBC1D8B 156..254 CDD:275419
PH-GRAM2_TBC1D8B 296..388 CDD:270159 12/54 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 399..420 5/25 (20%)
TBC 485..693 CDD:214540 70/241 (29%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 938..957
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1032..1061
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.