DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GAPcenA and Tbc1d16

DIOPT Version :9

Sequence 1:NP_001097549.1 Gene:GAPcenA / 38945 FlyBaseID:FBgn0035879 Length:1194 Species:Drosophila melanogaster
Sequence 2:XP_006532756.1 Gene:Tbc1d16 / 207592 MGIID:2652878 Length:782 Species:Mus musculus


Alignment Length:930 Identity:174/930 - (18%)
Similarity:315/930 - (33%) Gaps:320/930 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 STKSSE-SSITTSG--------EYEIVTDSN---VASPMEQVKQVVNQEGTQPEVGGKPPTSLSA 58
            |:|:|: .::||.|        :.|::...|   |.:|          ||.|..  |:.......
Mouse    11 SSKASDLLTLTTGGSGGSLSVLDGEVIYSKNNVCVHAP----------EGLQGP--GEHHPGYLC 63

  Fly    59 LALSSPEAGGDRSPTLDMAHNRNLSDMQHEMTDALKDLELERGVAASGEKSAQRLPSHQQKSLTL 123
            |.:...|..|   .||.:|...| |.:|.:..:||:.:..|    :|..:.|.| |..::     
Mouse    64 LYMEKDELLG---ATLILAWVPN-SRIQRQDEEALRYITPE----SSPVRKAPR-PRRRR----- 114

  Fly   124 PLTGSGGGSVDPEMRFPCTLFTPKSEETLDDASSSNRVGHSVFYDCIDASPACVEEKQDAMKPEK 188
              |.|.|....|....|.....||.|:.|....::....|        .||              
Mouse   115 --TTSLGALYQPSPTEPRPPLIPKDEDILVVVQNTQDTAH--------ISP-------------- 155

  Fly   189 GDTTDEEVSEIDQGCTIFSGVTYLGAANINAPKSETEVYRIMGELNSGSKSVGLKITVSIPNCSE 253
               |||:..::.||..:.      ||.:.:.|            ::|.|   |:..|||..:.:|
Mouse   156 ---TDEDGEKLAQGPEVD------GALSTSQP------------VHSDS---GILSTVSSQDGTE 196

  Fly   254 GLVVLHDAESNTIIATYEISSIILYYRGPVDTVENGCFAFTWLHGDALFQCHVFRCHIPEAVNQV 318
                  |.......|..|..|:.|...|              :..|:.|.........|..::.:
Mouse   197 ------DGREPRPEAVEEEGSLELSADG--------------VSRDSSFDSDSDAFSSPFCLSPI 241

  Fly   319 SACF----QKAF---QTYPPSMSCSLNSAVDMANSVTSDVSGNPLNTAGYEFIVSLEIRERVAKN 376
            ||..    ..||   :....:::|.:.:..:..:|.:|       :.|...|..|         |
Mouse   242 SAALAEGNSSAFLESEGSRQAINCWVGTPKEGISSPSS-------SDANLRFPDS---------N 290

  Fly   377 SYAAVPR----DRGCFKLRANTDKEVCITVKQTPSNVLQPLHI----ERCFGVLVAPGKLVV--- 430
            .....||    .|||      ..:::| .|.:.....::.|.:    |.|     ..|:|||   
Mouse   291 GLLQTPRWDEPQRGC------ALEQIC-GVFRVDLGHMRSLRLFFSDEAC-----TSGQLVVASR 343

  Fly   431 QKDMHLIDMHSMGYIQPGGTGVATESDSNAQQSSSWPYTIRAEWKAQEKAFEQLNLESSKTNLTV 495
            :....:...|.      ||....:|              :..:||                    
Mouse   344 ESQYKIFHFHH------GGLDKLSE--------------VFQQWK-------------------- 368

  Fly   496 AVDIVMRRIQEPVRFVIETPVTIQSASEMRIMDHFMSKRPMTLRFYLH-----LKRTEESNWKVN 555
                          |..||.:..|..::.|....|..:||......:|     .:|.:.|.| :|
Mouse   369 --------------FCTETHLRDQQVTDERTCMQFSIRRPKLPSSEIHPEESLYRRLDVSAW-LN 418

  Fly   556 SIDPSEEITEQPGHQQSSSLLKMGMNNLSRIVRSSSIASIEDDCPSDYSSDGDEPLLSGTGEVSK 620
            .::...::.|:  ::...::...|::                              :|..|||  
Mouse   419 HLNDLGQVEEE--YKLRQAIFFGGID------------------------------VSIRGEV-- 449

  Fly   621 DCSQDTLDEWDPIL----REWDSEKRPKNLAPLVRLGVPEALREKIWQKLANVEGRMEMNDKYKI 681
                     |..:|    .|..||:|             ||||.:..::.|.::.:       ::
Mouse   450 ---------WPFLLHYYSHESTSEER-------------EALRSQKRKEYAAIQQK-------RL 485

  Fly   682 LITKETK------CETVIQRDIHRTFPAHKCFKEIGGSGQDALFKVSKAYAVHDSEVGYCQGLSF 740
            .:|.|.:      .:..:.:|:.||...::.|:.......:::.::...|||::..:||.||:|.
Mouse   486 SMTPEEQRAFWRNVQFTVDKDVVRTDRNNQFFRGEDNPNVESMRRILLNYAVYNPAIGYSQGMSD 550

  Fly   741 IAASLLLH-MPEEDAFCVLVALMYDYGL------RDLYKAGFEVLYLRLYQLERLIKDQLPKLHE 798
            :.|.:|.. :.|.|.|...|.||.:...      .|:.:   ::||||  :|.||...   :.::
Mouse   551 LVAPILAEVLDESDTFWCFVGLMQNTIFVSSPRDEDMER---QLLYLR--ELLRLTHQ---RFYQ 607

  Fly   799 HFTACGIE--THMYASQWFLTLYTARFP---------LCFVFHVLDVFLLDGLPVLFQVAVTLLS 852
            |..:.|.:  ..::..:|.|..:...||         .|:..:..|.|.|       .:.|.:::
Mouse   608 HLVSLGEDGLQMLFCHRWLLLCFKREFPEAEALRIWEACWAHYQTDYFHL-------FICVAIVA 665

  Fly   853 ICESDL--RQLDFEGILKYF 870
            |...|:  :||..:.:|.:|
Mouse   666 IYGDDVIEQQLATDQMLLHF 685

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GAPcenANP_001097549.1 PTB_Rab6GAP 204..332 CDD:269922 23/134 (17%)
DUF3694 429..523 CDD:289256 12/96 (13%)
TBC 650..858 CDD:214540 47/231 (20%)
Phage_Gp23 <914..991 CDD:287621
Tbc1d16XP_006532756.1 TBC 439..667 CDD:214540 57/303 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5210
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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