DRSC/TRiP Functional Genomics Resources

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Protein Alignment GAPcenA and Tbc1d10c

DIOPT Version :9

Sequence 1:NP_001097549.1 Gene:GAPcenA / 38945 FlyBaseID:FBgn0035879 Length:1194 Species:Drosophila melanogaster
Sequence 2:NP_848765.2 Gene:Tbc1d10c / 108995 MGIID:1922072 Length:444 Species:Mus musculus


Alignment Length:457 Identity:112/457 - (24%)
Similarity:184/457 - (40%) Gaps:110/457 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   592 IASIEDDCPSDYSSDGDEPLLSG----------------TGEV-----SKDCSQDTLDEWDPILR 635
            ::.::||.    ||.|.:..|||                :||:     |.|..:....:|..:..
Mouse    10 LSELQDDS----SSLGSDSELSGPSPYRQADRYGFIGGNSGELRLCQPSADLIRQREMKWVEMTL 70

  Fly   636 EWDS--EKRPKNLAPLVRLGVPEALREKIWQKLANVEGRMEMN-DKYKILITK--ETKCETVIQR 695
            .|:.  .:|.|.:....|.|:|.|||.:.|..|.......:.| ..|:.|...  :.:....|.|
Mouse    71 HWEKTMSRRYKKVKIQCRKGIPSALRARCWPLLCGARMCQKNNPGTYQELAAAPGDPQWMETIGR 135

  Fly   696 DIHRTFPAHKCFKEIGGSGQDALFKVSKAYAVHDSEVGYCQGLSFIAASLLLHMPEEDAFCVLVA 760
            |:||.||.|:.|....|.||..|.:|.|||.::..|.||||....:||.||:|:|.|:||..||.
Mouse   136 DLHRQFPLHEMFVSPQGHGQQGLLQVLKAYTLYRPEQGYCQAQGPVAAVLLMHLPPEEAFWCLVQ 200

  Fly   761 LMYDYGLRDLYKAGFEVLYLRLYQLE-----RLIKDQLPKLHEHFTACGIETHMYASQWFLTLYT 820
            :.      ::|..|:...::...||:     .|::.|||::::|....|:...:|..:|||.|:|
Mouse   201 IC------EVYLPGYYGPHMEAVQLDAEVFMALLRRQLPRVYKHLQQVGVGPLLYLPEWFLCLFT 259

  Fly   821 ARFPLCFVFHVLDVFLLDGLPVLFQVAVTLLSICESDLRQLDFEGILKYFRVTLPKKCRSSSQAR 885
            ...|...|..:.|.||.:|..|||:|.:||:.:....:.|                         
Mouse   260 RSLPFPTVLRIWDAFLSEGAKVLFRVGLTLMRLALGTVEQ------------------------- 299

  Fly   886 KVMKQACERKIKKL--------KQYEEEFLLKKQHKERLEKEAQIYENRFGEERRKMQAEIDALN 942
               :.||...::.|        .|.:||..:.:.|...|.:             |.:|.||....
Mouse   300 ---RTACPGLLETLGALRAIPPTQLQEEVFMSQVHSVTLSE-------------RVLQQEIRIQL 348

  Fly   943 KQLTSA-------------KERAVEKEKKHTGIIQEYKQIIQR-------QEQDMNTLSETLGKV 987
            .||:.:             ..:|:.:.::..|:.:..|..|.|       :.:......:|.||.
Mouse   349 AQLSKSLPGPAPLPQARLPGAQAIFESQQLAGVRESTKPEIPRIVVQPPEEPKPPRRKPQTRGKT 413

  Fly   988 MH 989
            .|
Mouse   414 FH 415

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GAPcenANP_001097549.1 PTB_Rab6GAP 204..332 CDD:269922
DUF3694 429..523 CDD:289256
TBC 650..858 CDD:214540 72/215 (33%)
Phage_Gp23 <914..991 CDD:287621 16/96 (17%)
Tbc1d10cNP_848765.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..32 8/25 (32%)
TBC 87..292 CDD:214540 72/210 (34%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 383..444 7/33 (21%)
Interaction with calcineurin. /evidence=ECO:0000250 404..444 4/12 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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