DRSC/TRiP Functional Genomics Resources

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Protein Alignment LIN28B and CG9705

DIOPT Version :10

Sequence 1:XP_006715540.2 Gene:LIN28B / 389421 HGNCID:32207 Length:269 Species:Homo sapiens
Sequence 2:NP_648920.1 Gene:CG9705 / 39875 FlyBaseID:FBgn0036661 Length:143 Species:Drosophila melanogaster


Alignment Length:165 Identity:36/165 - (21%)
Similarity:49/165 - (29%) Gaps:77/165 - (46%)


- Green bases have known domain annotations that are detailed below.


Human    35 KLPEP--------AEEESQVLRG---TGHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKL 88
            :||.|        |...::.|..   ||..|.|:...|.|||:. |..|.      |||.|.|.:
  Fly    30 QLPSPIITRRTRTASTSARALENPVVTGMVKSFSRTKGHGFITP-NAGGE------DVFCHVSDI 87

Human    89 FMEGFRSLKEGEPVEFTFKKSSKGLESIRVTGPGGSPCLGSERRPKGKTLQKRKPKGDRCYNCGG 153
                     |||.|                      |..|.|.:                     
  Fly    88 ---------EGEYV----------------------PMPGDEVK--------------------- 100

Human   154 LDHHAKECSLPPQPKKCHYC--QSIMHMVANCPHK 186
                .:.|::||:.:| |..  ..|.|:.....||
  Fly   101 ----YRLCAIPPKYEK-HQAVHVQISHLTPEVHHK 130

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LIN28BXP_006715540.2 CSP_CDS 50..120 CDD:239905 19/69 (28%)
PTZ00368 <139..184 CDD:173561 7/46 (15%)
CG9705NP_648920.1 CSP_CDS 55..120 CDD:239905 27/128 (21%)

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