DRSC/TRiP Functional Genomics Resources

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Protein Alignment Prim1 and POLA3

DIOPT Version :10

Sequence 1:NP_523972.2 Gene:Prim1 / 38942 FlyBaseID:FBgn0011762 Length:438 Species:Drosophila melanogaster
Sequence 2:NP_199003.5 Gene:POLA3 / 834193 AraportID:AT5G41880 Length:451 Species:Arabidopsis thaliana


Alignment Length:432 Identity:175/432 - (40%)
Similarity:238/432 - (55%) Gaps:44/432 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 PEVLQDM----LPVYYRRLFPHLPFYRWLSYG------SSEDAIFSNREISFTLQDDIYIRYLCF 79
            |::..|.    |.:||..|||:...::|||||      ..::..|..||.||||::|:|:||..|
plant    20 PKIENDFNVHYLRIYYGNLFPYTDIHKWLSYGHDGKHPGCDEYYFGRREFSFTLENDVYLRYKSF 84

  Fly    80 DTQAELEKEICSRNPIKIDIGPVMHSKP-KNHRSIPGG---LTPVQRELVFDIDMTDYDEVRTCC 140
            ...:.:|..|.|..|.|||||.|....| |.|.....|   .|||:||||||||:||||:||.||
plant    85 KNASLMEAAIKSNFPYKIDIGAVYSVDPDKRHAYAQSGTNLFTPVERELVFDIDITDYDDVRYCC 149

  Fly   141 SGAGVCLKCWKFMVLAARVLDVALREDFGFEHIIWIFSGRRGIHCWVCDYQARHLDGRGRYAVAE 205
            |||.||.|||..|.:|.:|:|.:|||||||:||:|:||||||:||||||.:||.|....|.||||
plant   150 SGADVCSKCWPLMTVAIKVIDTSLREDFGFKHILWVFSGRRGVHCWVCDAKARRLTNEQRSAVAE 214

  Fly   206 YLNIITYASFAGGNSPRCSMGDRPHHSL-----KRALKIVEPMFEEIVLEDQNLFGTPKGVTKLL 265
            |..:..      ||.......|...|||     :..:..::..||..:...|::|.:.:...|:|
plant   215 YFRVYK------GNENNAKKVDLMGHSLHPFLARSYVDFIKSFFEGELQATQSIFSSKEKYEKIL 273

  Fly   266 NMVHDD----AARGELESYMQKNLEDGAHSRLVWESFIKYANSMRTSTTSAWSRKLKNIVAEIQL 326
            .|:.|:    ..||:.|:..:.:|.:.|.|.|.||...|...|.|....|     |:..|.||..
plant   274 GMITDEDIQADLRGKWENSARSSLSEEATSLLRWEQLKKALQSKRNKALS-----LRTCVEEIVF 333

  Fly   327 GLLYPRLDINVTRGFNHLLKAPFCIHPATGKVCVPFSVSAVAKFDPTTVPTITQLLHEINAFDDK 391
            ...|||:|:.|::..|||||||||:||.||:||||...:...:|||..|||::||:.|||:    
plant   334 TFTYPRIDLEVSKQMNHLLKAPFCVHPKTGRVCVPIDPNNCDEFDPLAVPTLSQLIEEINS---- 394

  Fly   392 SKSYMEAPEDKSRIKDHKKTSMFKGVVVF-EEFLRKLERSQK 432
            ....|:..:|     |...:.:.|.:..| ..||..|.:|.|
plant   395 GGLRMDVDDD-----DSDSSLLGKSIKFFRSSFLEPLLKSCK 431

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prim1NP_523972.2 AE_Prim_S 41..372 CDD:240130 148/349 (42%)
POLA3NP_199003.5 AE_Prim_S 40..379 CDD:240130 148/349 (42%)

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