DRSC/TRiP Functional Genomics Resources

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Protein Alignment Prim1 and prim1

DIOPT Version :10

Sequence 1:NP_523972.2 Gene:Prim1 / 38942 FlyBaseID:FBgn0011762 Length:438 Species:Drosophila melanogaster
Sequence 2:NP_958856.1 Gene:prim1 / 30440 ZFINID:ZDB-GENE-990603-6 Length:425 Species:Danio rerio


Alignment Length:426 Identity:181/426 - (42%)
Similarity:255/426 - (59%) Gaps:25/426 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 YNPEVLQDMLPVYYRRLFPHLPFYRWLSYGSSEDAIFSNREISFTLQDDIYIRYLCFDTQAELEK 87
            |:...|.|:||:|||||||...::||||||......|.|||.||||:||||:||..|.:|.||||
Zfish     6 YDSACLPDLLPLYYRRLFPFSQYFRWLSYGGVSKNYFQNREFSFTLKDDIYVRYQSFSSQNELEK 70

  Fly    88 EICSRNPIKIDIGPVMHSKPKNHRSIPGG-LTPVQRELVFDIDMTDYDEVRTCCSGAGVCLKCWK 151
            |:....|.|||||.|...:|..|.::..| ...:::||||||||||||:||.|||.|.:|.|||.
Zfish    71 EMQKMVPYKIDIGAVYSHRPSQHNTVKSGTFQALEKELVFDIDMTDYDDVRRCCSAADICSKCWT 135

  Fly   152 FMVLAARVLDVALREDFGFEHIIWIFSGRRGIHCWVCDYQARHLDGRGRYAVAEYLNIITYASFA 216
            .|.:|.|:||.||||||||.|::|::|||||:||||||..||.|....|.||||||:::     .
Zfish   136 LMTIAIRILDRALREDFGFHHLLWVYSGRRGVHCWVCDDAARKLSVAARSAVAEYLSLV-----K 195

  Fly   217 GGNSP--RCSMGDRPHHSLKRALKIVEPMFEEIVLEDQNLFGTPKGVTKLLNMVHDDAARGELES 279
            ||...  :..:.|..|..:.|:|.:||..|.:..:.||::.|..:.|.|:|.::.:|..: :|..
Zfish   196 GGEETLRKVVLSDPIHPFISRSLSVVEHYFPQYAIVDQDILGNKESVDKVLALLPEDIKK-DLIE 259

  Fly   280 YMQKNLEDGAHSRLVWESFIKYANSMRTSTTSAWSRKLKNIVAEIQLGLLYPRLDINVTRGFNHL 344
            |.|.:.|....    |:...:..:..::|:........|    ||.|...|||||:||::|.|||
Zfish   260 YYQNHKEPMKR----WDRLRQLVDHKKSSSKKGGQYYDK----EIMLQYCYPRLDVNVSKGVNHL 316

  Fly   345 LKAPFCIHPATGKVCVPFSVSAVAKFDPTTVPTITQLLHEI------NAFDD--KSKSYMEAPED 401
            ||:||.:||.||::.||..:..:..|||..||||:.:..|:      .|.|:  |.|...:...:
Zfish   317 LKSPFSVHPKTGRISVPIDLKELDTFDPFEVPTISLICEELEKPRADEAEDEDVKDKENEQEAAE 381

  Fly   402 KSRIKDHKKTSMFKGVVVFEEFLRKLERSQKSASLQ 437
            :.||:|:|:||:.|.|.|.:.||..:.||:|...|:
Zfish   382 RRRIRDYKRTSLAKYVKVLDRFLDSMARSRKGEMLK 417

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prim1NP_523972.2 AE_Prim_S 41..372 CDD:240130 144/333 (43%)
prim1NP_958856.1 AE_Prim_S 24..344 CDD:240130 144/333 (43%)

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