DRSC/TRiP Functional Genomics Resources

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Protein Alignment Prim1 and Prim1

DIOPT Version :10

Sequence 1:NP_523972.2 Gene:Prim1 / 38942 FlyBaseID:FBgn0011762 Length:438 Species:Drosophila melanogaster
Sequence 2:NP_001291294.3 Gene:Prim1 / 246327 RGDID:621380 Length:417 Species:Rattus norvegicus


Alignment Length:426 Identity:175/426 - (41%)
Similarity:255/426 - (59%) Gaps:31/426 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 YNPEVLQDMLPVYYRRLFPHLPFYRWLSYGSSEDAIFSNREISFTLQDDIYIRYLCFDTQAELEK 87
            ::|..|.::|.:|||||||:..:||||:||......|.:||.||||:|||||||..|:.|::|||
  Rat     4 FDPAELPELLKLYYRRLFPYAQYYRWLNYGGVTKNYFQHREFSFTLKDDIYIRYQSFNNQSDLEK 68

  Fly    88 EICSRNPIKIDIGPVMHSKPKNHRSIP-GGLTPVQRELVFDIDMTDYDEVRTCCSGAGVCLKCWK 151
            |:...||.|||||.|...:|..|.::. |.....::||||||||||||:||.|||.|.:|.|||.
  Rat    69 EMQKMNPYKIDIGAVYSHRPSQHNTVKLGAFQAQEKELVFDIDMTDYDDVRRCCSSADICSKCWT 133

  Fly   152 FMVLAARVLDVALREDFGFEHIIWIFSGRRGIHCWVCDYQARHLDGRGRYAVAEYLNIITYASFA 216
            .|.:|.|::|.||:|||||:|.:|::|||||:||||||...|.|....|..:.|||::|     .
  Rat   134 LMTMAMRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSAVRSGIVEYLSLI-----K 193

  Fly   217 GGN--SPRCSMGDRPHHSLKRALKIVEPMFEEIVLEDQNLFGTPKGVTKLLNM----VHDDAARG 275
            ||:  ..:..:.::.|..:::::.|::..|||..|.||::....:...|:|.:    |||:    
  Rat   194 GGHDVKKKVHLNEKVHPFVRKSINIIKKYFEEYALVDQDILENQENWDKILALVPETVHDE---- 254

  Fly   276 ELESYMQKNLEDGAHSRLVWESFIKYAN---SMRTSTTSAWSRKLKNIVAEIQLGLLYPRLDINV 337
                 :||..:....|...||...|.|:   :.:......|      :..||.|...:|||||||
  Rat   255 -----LQKGFQRFHSSPQRWEYLRKVASAPQNTKNDKCGPW------LEWEIMLQYCFPRLDINV 308

  Fly   338 TRGFNHLLKAPFCIHPATGKVCVPFSVSAVAKFDPTTVPTITQLLHEINAFDDKSKSYMEAPED- 401
            ::|.|||||:||.:||.||::.||.....|.:|||..||||:.:..|::......|...|...| 
  Rat   309 SKGVNHLLKSPFSVHPKTGRISVPIDFQKVDQFDPFVVPTISAICRELDVVSTTEKEKEENETDS 373

  Fly   402 KSRIKDHKKTSMFKGVVVFEEFLRKLERSQKSASLQ 437
            :.|::|:|:||:...|.|||:||..|::|:|.|.|:
  Rat   374 RHRVRDYKRTSLAPYVKVFEQFLENLDKSRKGALLK 409

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prim1NP_523972.2 AE_Prim_S 41..372 CDD:240130 140/340 (41%)
Prim1NP_001291294.3 None

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