Protein Alignment Cpsf6 and AT1G13190

DIOPT Version :10

• Sequence 1: NP_648206.1
• Gene: Cpsf6 / 38937
• FlyBaseID: FBgn0035872
• Length: 652
• Species: Drosophila melanogaster
• Sequence 2: NP_172778.1
• Gene: AT1G13190 / 837877
• AraportID: AT1G13190
• Length: 573
• Species: Arabidopsis thaliana
• Alignment Length: 642
• Identity: 151/642 - (23%)
• Similarity: 205/642 - (31%)
• Gaps: 250/642 - (38%)

  Fly    12 DLDKDFAGQAQDEFGGDGVDLYDDI-------GGPTESAASGGGGGGT-------PSADGAAGPG 62
            |...|...|| ..||..|:::  ||       .|.|....:..|..|.       |..:....|.
plant   107 DTRSDVYPQA-SSFGAKGLNI--DIQSNKIAQQGSTTVVLNNHGFSGNAVNVPEMPVHNSYGAPP 168

  Fly    63 SGE---PGERNSGGPNGVYHQSSGSLTPTMNRRYQLYVGNLTWWTTDQDIANSLRDIGVSDLQEV 124
            .|.   |..:.|..||.:.::|........|....|:||.|.|||||.:|.:.|...|  .::|:
plant   169 QGAQQIPVSQMSVNPNVMMNKSPTQSFVVDNGNTMLFVGELHWWTTDAEIESVLSQYG--RVKEI 231

  Fly   125 KFFENRANGQSKGFSVISLGSESSLRAVLDQLPKKEMHGQAPVVTYPSKQALTQF---------- 179
            |||:.|.:|:|||:..:.....::..|..:.:.....:|:|.||.:.|.:.|.|.
plant   232 KFFDERVSGKSKGYCQVEFYDSAAAAACKEGMNGFIFNGKACVVAFASPETLKQMGANFTGRNQG 296

  Fly   180 -ESLQKTRPVPPPQ------------QNGPPRGPAPPSMGG---GPMPTGHPGGPQGGGPPGHPP 228
             ..:|..||:....            |||.  |......||   |....|:.||..||...|
plant   297 QNQIQNRRPLNEGMGRGNNNNNNMNTQNGD--GGRNYGRGGFARGGQGMGNRGGAWGGAMRG--- 356

  Fly   229 RGMNSIMQ---PGQYRPQHMSQVPQVGGPNSGPPRMQPPMHPQGGLMGNQQPPPRYPSAQGQWPG 290
            ||:|::..   .|.|            ||....|.....|||| |:||
plant   357 RGVNNMASGSGAGPY------------GPGLAGPAFGGMMHPQ-GMMG----------------- 391

  Fly   291 QRPGGPRPGPPNGPPQRPMFQGGPMGMPVRGPAGPDWRRPPMHGGFPPQGPPRGLPPAPGPGGPH 355
              .||          ..|.|.|       || ||        :||:      .|:   ..||.||
plant   392 --AGG----------FDPTFMG-------RG-AG--------YGGY------SGI---AYPGMPH 419

  Fly   356 GAP----------APHVNPAFFNQPGGPAQHPGMGGPPHGAP--------GPQPGMNMPPQQGMN 402
            ..|          |||||||||....|.....||.| .|.|.        |.:.|
plant   420 SYPGVNAMGMVGIAPHVNPAFFGTGMGTMGSSGMNG-VHAAAMWSEANGGGGEEG---------- 473

  Fly   403 MTPQHGPPPQFAQHGPRGPWPPPQGKPPGPFPDPQQMGPQLTEVEFEEVMSRNRTVSSSAIARAV 467
                                    |...|.:.|..|        |.||..||::
plant   474 ------------------------GSEYGGYEDETQ--------EKEEKPSRDK----------- 495

  Fly   468 SDAAAGEYSSAIETLVTAISLIKQSKVAHDERCKILISSLQDTLHGIEAKSYNRRERSRSRERSH 532
                                                           |..:..|.....|.:|.|
plant   496 -----------------------------------------------ERATTERDWSENSGDRRH 513

  Fly   533 RSRQRRERSTSRYRERSRERERDRDRERERDGGSYRERSRSRERERQAPDHYRDDSR 589
            :|.:..:.|   :||..::|:||.| |.:|...|.:.|||||..|    |.:|..||
plant   514 KSHREEKDS---HREYKQQRDRDSD-EFDRGQSSLKSRSRSRMSE----DDHRSRSR 562

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Cpsf6	NP_648206.1	RRM_CFIm68	94..170	CDD:410048	26/75 (35%)
		PABP-1234	<131..287	CDD:130689	43/184 (23%)
		Med15	159..>439	CDD:312941	75/326 (23%)
AT1G13190	NP_172778.1	RRM_CFIm68_CFIm59	204..277	CDD:409807	26/74 (35%)
		PRP38_assoc	486..571	CDD:463734	31/143 (22%)