DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cpsf6 and cfim-2

DIOPT Version :9

Sequence 1:NP_648206.1 Gene:Cpsf6 / 38937 FlyBaseID:FBgn0035872 Length:652 Species:Drosophila melanogaster
Sequence 2:NP_001367218.1 Gene:cfim-2 / 177710 WormBaseID:WBGene00008362 Length:491 Species:Caenorhabditis elegans


Alignment Length:615 Identity:191/615 - (31%)
Similarity:260/615 - (42%) Gaps:183/615 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 DLYAEDLDKDFAGQAQDEFGGDGVDLYDDIGGPTESAASGGGGGGT------PSADGAAGPGSGE 65
            :|..||:|                ||||:...||.|..|......|      |:|...|.|.:..
 Worm    31 ELKEEDID----------------DLYDEAIAPTNSTESAKPVSPTITTVTAPTAGIGAKPATSS 79

  Fly    66 PGERNSGGPNGVYHQSSGSLTPTMNRRYQLYVGNLTWWTTDQDIANSLRDIGV--SDLQEVKFFE 128
            .|                       |:|..|||||.|:|||.|:..:|:..|:  |...::||||
 Worm    80 EG-----------------------RKYCCYVGNLLWYTTDADLLKALQSTGLARSQFADMKFFE 121

  Fly   129 NRANGQSKGFSVISLGSESSLRAVLDQLPKKEMHGQAPVVTYPSKQALTQFESLQ-KTRPVPPPQ 192
            ||.||||||::::.|.|:::::..::.||.|.:|||:|.|...:|....:.|..| |.:..|..:
 Worm   122 NRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSYNKTNQAKLEDAQAKNQTRPDVK 186

  Fly   193 QNGPPRGPAPPSMG----GGPMPTGHPGGPQGGGPPGHPPRGMNSI------MQPGQYRPQHMSQ 247
            :.|...|..  :||    |....||.. |....|..|.||..|..:      .||... |.:::|
 Worm   187 KKGFEEGCV--NMGTIRIGAGGQTGRT-GTSVSGRSGPPPLMMQQVRPTPLMSQPTSL-PSNLNQ 247

  Fly   248 VPQVGGPNSGP--PRMQPPMHPQGGLMGNQQPPPRYPSAQGQWPGQRPGGPRPGPPNGPPQRPMF 310
            .||:....:|.  |.|.....||..::||                    ||..|......|:|..
 Worm   248 APQMRLQINGQQVPLMNRAPVPQQTMLGN--------------------GPLGGMNQQIQQQPQM 292

  Fly   311 QGGPMGMPVRGPAGPDWRRPPMHGGFPPQGPPRGLPPAPGPGGPHGAPAPHVNPAFFNQPGGPAQ 375
            .   ||..||                |......|:.|..|...|     |.:|..|.|     :.
 Worm   293 M---MGQQVR----------------PMMQTSMGIQPMMGMNAP-----PPMNNQFQN-----SS 328

  Fly   376 HPGMGGPPHGAPGPQPGMNM-----PPQQGMNMTPQHGPPPQFAQHGPRGPWPPPQGKPPGPFPD 435
            .|    |..|:.|.||.|.|     ||..|:                      ||....|..||.
 Worm   329 RP----PQLGSMGVQPLMQMNTAMRPPINGL----------------------PPVHVNPQMFPG 367

  Fly   436 PQQMGPQLTEVEFEEVMSRNRTVSSSAIARAVSDAAAGEYSSAIETLVTAISLIKQSKVAHDERC 500
            .|  |..|::.|||:||:||:||||||||||::||:.|:...|.||::|||.|||.|::.|||||
 Worm   368 LQ--GTVLSDAEFEDVMTRNQTVSSSAIARAITDASVGDIKGASETILTAIQLIKNSRIGHDERC 430

  Fly   501 KILISSLQDTLHGIEAKSYNRRERSRSRERSHRSRQRRERSTSRYRERSRERERDRDRERERDGG 565
            :.|:..|:.||.|:|:|.|:      ||.:||             |:|||.|||||.|       
 Worm   431 RQLVYGLEHTLKGLESKGYS------SRSKSH-------------RDRSRSRERDRKR------- 469

  Fly   566 SYRERSRSRERERQAPDHYRDDSRSVRPRK 595
              |.|||:|.|..         |||..||:
 Worm   470 --RRRSRTRSRSY---------SRSPSPRR 488

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cpsf6NP_648206.1 RRM_CFIm68 94..170 CDD:241087 35/77 (45%)
cfim-2NP_001367218.1 RRM_CFIm68 85..163 CDD:410048 35/77 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160157598
Domainoid 1 1.000 135 1.000 Domainoid score I3085
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 211 1.000 Inparanoid score I2369
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG48498
OrthoDB 1 1.010 - - D1016696at2759
OrthoFinder 1 1.000 - - FOG0003643
OrthoInspector 1 1.000 - - oto18980
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR23204
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4521
SonicParanoid 1 1.000 - - X2511
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1313.040

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