DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arl5 and Trim23

DIOPT Version :9

Sequence 1:NP_648201.1 Gene:Arl5 / 38931 FlyBaseID:FBgn0035866 Length:179 Species:Drosophila melanogaster
Sequence 2:NP_001348467.1 Gene:Trim23 / 81003 MGIID:1933161 Length:574 Species:Mus musculus


Alignment Length:165 Identity:71/165 - (43%)
Similarity:111/165 - (67%) Gaps:7/165 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 EHKLVMVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVEEVVWRNIHFLVWDLGGQQSLRAAWSTY 80
            |.::|.:|||.|||||||::...:|.:...||||.|||.|.::|:.|.:||:||:..||..|..|
Mouse   404 EIRVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHY 468

  Fly    81 YTNTELVIMVIDSTDRERLAVTREELYRMLQHEDLSKASLLVYANKQDLKGSMSAAEISRQLDLT 145
            |.||:.|:.|:||:.|:|::....||.::|..::|..|.||::|||||:.|::|..||:   :|.
Mouse   469 YLNTQAVVFVVDSSHRDRISEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEIT---ELL 530

  Fly   146 SIKK----HQWHIQACCALTGEGLYQGLEWIVQRI 176
            |:.|    ..|:||.|.|.:|.|||:||:|:.:::
Mouse   531 SLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQL 565

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arl5NP_648201.1 Arl5_Arl8 3..175 CDD:133353 71/162 (44%)
Trim23NP_001348467.1 mRING-HC-C3HC3D_TRIM23_C-IX 28..77 CDD:319559
modified RING-HC finger (C3HC3D-type) 31..75 CDD:319559
BBOX 125..168 CDD:237988
BBOX 173..219 CDD:197662
ClassIIa_HDAC_Gln-rich-N 226..370 CDD:330228
ARF-like 390..574 71/165 (43%)
ARD1 406..574 CDD:206723 70/163 (43%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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