DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab19 and Rab13

DIOPT Version :9

Sequence 1:NP_001261575.1 Gene:Rab19 / 38930 FlyBaseID:FBgn0015793 Length:219 Species:Drosophila melanogaster
Sequence 2:NP_112354.1 Gene:Rab13 / 81756 RGDID:620880 Length:203 Species:Rattus norvegicus


Alignment Length:199 Identity:88/199 - (44%)
Similarity:133/199 - (66%) Gaps:5/199 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 FDFLFKIVLIGDCGTGKTCIVDRFKTGNYIERHGNTIGVDFSMKTIAVEGKQIKLQIWDTAGQER 82
            :|.|||::||||.|.||||::.||...|:...:.:|||:||.::|:.:|||:||||:||||||||
  Rat     5 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVEIEGKRIKLQVWDTAGQER 69

  Fly    83 FRTITQSYYRSANGVLIVYDITKRSSFSNLQKWIEEVRRYTASNVLIILVGNKCDLEEQREVDFE 147
            |:|||.:|||.|.|:::|||||...||.|:|.|::.::...::.|..:|:|||||:|.:|:|..|
  Rat    70 FKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQRE 134

  Fly   148 EARQMCQYIPEILFVMETSAKENMNVEDAFRCLANE--LKRQHDANNVEEVPENT-ITLGQGKPL 209
            :|.::.:. ..|.| .|||||.::||::||..||.:  ||.....:.....|.:| :.:...|..
  Rat   135 QAERLARE-HRIRF-FETSAKSSVNVDEAFSSLARDILLKTGGRRSGNSSKPSSTDLKVSDKKNS 197

  Fly   210 KSCS 213
            ..||
  Rat   198 NKCS 201

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab19NP_001261575.1 Rab19 19..184 CDD:133267 81/166 (49%)
Rab13NP_112354.1 Rab8_Rab10_Rab13_like 6..172 CDD:206659 81/167 (49%)
Effector region. /evidence=ECO:0000250 37..45 3/7 (43%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 173..203 5/29 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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