DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab19 and Rab3c

DIOPT Version :10

Sequence 1:NP_523970.1 Gene:Rab19 / 38930 FlyBaseID:FBgn0015793 Length:219 Species:Drosophila melanogaster
Sequence 2:NP_076341.1 Gene:Rab3c / 67295 MGIID:1914545 Length:227 Species:Mus musculus


Alignment Length:169 Identity:71/169 - (42%)
Similarity:115/169 - (68%) Gaps:2/169 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 NEEHFDFLFKIVLIGDCGTGKTCIVDRFKTGNYIERHGNTIGVDFSMKTIAVEGKQIKLQIWDTA 78
            ::::||::||:::||:...|||..:.|:...::.....:|:|:||.:||:....|:|||||||||
Mouse    23 SDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDTA 87

  Fly    79 GQERFRTITQSYYRSANGVLIVYDITKRSSFSNLQKWIEEVRRYTASNVLIILVGNKCDLEEQRE 143
            ||||:||||.:|||.|.|.:::||||...||:.:|.|..:::.|:..|..:||.|||||:|::|.
Mouse    88 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILAGNKCDMEDERV 152

  Fly   144 VDFEEARQMCQYIPEILFVMETSAKENMNVEDAFRCLAN 182
            |..|..:::.:.:....|  |||||:|:||:..|..|.:
Mouse   153 VSTERGQRLGEQLGFEFF--ETSAKDNINVKQTFERLVD 189

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab19NP_523970.1 Rab19 19..184 CDD:133267 70/164 (43%)
Rab3cNP_076341.1 Rab3 30..194 CDD:206657 69/162 (43%)
Switch 1. /evidence=ECO:0000250|UniProtKB:P10949 53..66 2/12 (17%)
Switch 2. /evidence=ECO:0000250|UniProtKB:P10949 86..104 13/17 (76%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 202..227
Blue background indicates that the domain is not in the aligned region.

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