DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab19 and rab10

DIOPT Version :9

Sequence 1:NP_001261575.1 Gene:Rab19 / 38930 FlyBaseID:FBgn0015793 Length:219 Species:Drosophila melanogaster
Sequence 2:NP_001002566.1 Gene:rab10 / 436839 ZFINID:ZDB-GENE-040718-304 Length:201 Species:Danio rerio


Alignment Length:201 Identity:87/201 - (43%)
Similarity:127/201 - (63%) Gaps:10/201 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 FDFLFKIVLIGDCGTGKTCIVDRFKTGNYIERHGNTIGVDFSMKTIAVEGKQIKLQIWDTAGQER 82
            :|.|||::||||.|.||||::.||....:.....:|||:||.:||:.::||:|||||||||||||
Zfish     6 YDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQER 70

  Fly    83 FRTITQSYYRSANGVLIVYDITKRSSFSNLQKWIEEVRRYTASNVLIILVGNKCDLEEQREVDFE 147
            |.|||.||||.|.|:::|||||...||.|:.||:..:..:...:|..:|:|||||:|::|.|...
Zfish    71 FHTITTSYYRGAMGIMLVYDITNAKSFENISKWLRNIDEHANEDVERMLLGNKCDMEDKRVVPKA 135

  Fly   148 EARQMCQYIPEILFVMETSAKENMNVEDAFRCLANEL-----KRQHDANNVEEVPENTITLGQGK 207
            :..|:.:  ...:...|||||.|:|:|.||..||.::     .::.::.||:......:|   |.
Zfish   136 KGEQIAK--EHGIRFFETSAKANINIEKAFLTLAEDILKKTPVKEPNSENVDISTGGGVT---GW 195

  Fly   208 PLKSCS 213
            ..|.||
Zfish   196 KTKCCS 201

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab19NP_001261575.1 Rab19 19..184 CDD:133267 80/164 (49%)
rab10NP_001002566.1 Rab8_Rab10_Rab13_like 7..173 CDD:206659 80/167 (48%)
RAB 10..173 CDD:197555 78/164 (48%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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