DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab19 and Rabl6

DIOPT Version :10

Sequence 1:NP_523970.1 Gene:Rab19 / 38930 FlyBaseID:FBgn0015793 Length:219 Species:Drosophila melanogaster
Sequence 2:NP_001102043.1 Gene:Rabl6 / 362084 RGDID:1307615 Length:731 Species:Rattus norvegicus


Alignment Length:161 Identity:35/161 - (21%)
Similarity:76/161 - (47%) Gaps:34/161 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 KIVLIGDCGTGKTCIVDRFKTGNYIERHGNT-----IGVDFSMKTIAVEGKQIKLQIWDTAGQER 82
            |||:.||..||||.:..|.:...::|.:..|     ..:.::.||   ....:|:::||...:.:
  Rat    45 KIVIRGDRNTGKTALWHRLQGKKFVEEYIPTQEIQVTSIHWNYKT---TDDVVKVEVWDVVDKGK 106

  Fly    83 -------FRTITQ---------------SYYRSANGVLIVYDITKRSSFSNLQKWIEEVRRYTAS 125
                   .:|...               ..|::.|||::::||||:.:|:.:.:.:.:|    .:
  Rat   107 CKKRGDCLKTENDPQEAESEMALDAEFLDVYKNCNGVVMMFDITKQWTFNYVLRELPKV----PT 167

  Fly   126 NVLIILVGNKCDLEEQREVDFEEARQMCQYI 156
            :|.:.::||..|:.|.|.:..::.|...:::
  Rat   168 HVPVCVLGNYRDMGEHRVILPDDVRDFIEHL 198

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab19NP_523970.1 Rab19 19..184 CDD:133267 35/161 (22%)
Rabl6NP_001102043.1 P-loop containing Nucleoside Triphosphate Hydrolases 44..221 CDD:476819 35/161 (22%)
PHA03307 303..>549 CDD:223039
Blue background indicates that the domain is not in the aligned region.

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