DRSC/TRiP Functional Genomics Resources

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Protein Alignment cert and SWH1

DIOPT Version :9

Sequence 1:NP_001286978.1 Gene:cert / 38928 FlyBaseID:FBgn0027569 Length:601 Species:Drosophila melanogaster
Sequence 2:NP_009421.3 Gene:SWH1 / 851286 SGDID:S000000081 Length:1188 Species:Saccharomyces cerevisiae


Alignment Length:496 Identity:99/496 - (19%)
Similarity:180/496 - (36%) Gaps:139/496 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 EAAAGSQSQSDASEEEEYLDNSIELRGYLSKWTNYIYGWQPRYIVL-KDGTLSYYKSESESDFGC 81
            |.|...||..|.:...  |..:...:|||.||||:..|::.|:.:| .||.||||..::::...|
Yeast   262 ERATREQSVIDVTNNN--LHEAPTYKGYLKKWTNFAQGYKLRWFILSSDGKLSYYIDQADTKNAC 324

  Fly    82 RGAISLTKATIKAHESDELRFDVV--VNNLNNWCLRAETSEDRMHWVDVLQLYKADSGSTDTTSL 144
            ||:::::..::....|::|:|:::  .|.:..|.|:.....:...||..:|  .|...:.|...|
Yeast   325 RGSLNMSSCSLHLDSSEKLKFEIIGGNNGVIRWHLKGNHPIETNRWVWAIQ--GAIRYAKDREIL 387

  Fly   145 RRHGSTMSLQSNTISLTSGGSLKKTQRNLREKVGELETFKDILFGQIETLQRYFDACSEVNKNNA 209
            ..:|.    .|.:::|:.|         |..||.                          ||.|.
Yeast   388 LHNGP----YSPSLALSHG---------LSSKVS--------------------------NKENL 413

  Fly   210 QPLDLGDGLKSIDFKGESITFRATTSGVLTTLQHCLE-IIAESDESWKRKLEREIDKRRRSEDQS 273
            .                      .||..||...|..: .:.::|.      :.:.|....:.::|
Yeast   414 H----------------------ATSKRLTKSPHLSKSTLTQNDH------DNDDDSTNNNNNKS 450

  Fly   274 KKLKDEVEKMKRLSYPGPDFEEGPHSTLPEDEFFDAVETGLDKIEEDMQLRFKLKLQSQISQTLV 338
            ..                |:::..::...:|:.:|..:.....||       .|.|.|..||:| 
Yeast   451 NN----------------DYDDNNNNNNNDDDDYDDDDESRPLIE-------PLPLISSRSQSL- 491

  Fly   339 NVPHEAVAEGEEAREEFGTGAEATSHALWPEIDRVCKEQLHYAREGVGQDGNGWQIFADEGEIKM 403
                ..:..|..:|:   :...:|..|..|..|.      .|:.:....|||......:.||   
Yeast   492 ----SEITPGPHSRK---STVSSTRAADIPSDDE------GYSEDDSDDDGNSSYTMENGGE--- 540

  Fly   404 YKREEEVNGLVMDPLKAYHTVQGVTAREMCHYFFMPEFRND-------WETTLEDCTILEKISAD 461
            ...:|::|.:....::..|.:|...:.|:..   :.|...|       |.|.   .|.:|.:|. 
Yeast   541 NDGDEDLNAIYGPYIQKLHMLQRSISIELAS---LNELLQDKQQHDEYWNTV---NTSIETVSE- 598

  Fly   462 TLLFLQTHKRIWPASQRDAQFWSHMRKITDNLEPGARDMWV 502
               |.....|:  .|||:.:..:.|.|..|     ..::|:
Yeast   599 ---FFDKLNRL--TSQREKRMIAQMTKQRD-----VNNVWI 629

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
certNP_001286978.1 PH 40..130 CDD:278594 27/92 (29%)
PH_GPBP 42..142 CDD:270100 30/102 (29%)
START_STARD11-like 363..601 CDD:176881 30/147 (20%)
SWH1NP_009421.3 Ank_4 56..117 CDD:372654
ANK repeat 56..94 CDD:293786
ANKYR <89..181 CDD:223738
ANK repeat 96..193 CDD:293786
ANK repeat 195..227 CDD:293786
Ank 197..228 CDD:394980
PH_Osh1p_Osh2p_yeast 281..383 CDD:241446 29/103 (28%)
SMC_prok_A <562..>774 CDD:274009 18/85 (21%)
Oxysterol_BP 800..1174 CDD:395990
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0.993157 Normalized mean entropy S3799
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.860

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