DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment cert and Cert1

DIOPT Version :9

Sequence 1:NP_001286978.1 Gene:cert / 38928 FlyBaseID:FBgn0027569 Length:601 Species:Drosophila melanogaster
Sequence 2:NP_001102405.1 Gene:Cert1 / 365652 RGDID:1309131 Length:624 Species:Rattus norvegicus


Alignment Length:641 Identity:280/641 - (43%)
Similarity:400/641 - (62%) Gaps:72/641 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 SSNEAAAGSQSQSDASEEEEYLDNSIELRGYLSKWTNYIYGWQPRYIVLKDGTLSYYKSESESDF 79
            |.|::...|.|:.|...|.   ...:|..|.||||||||:|||.|::|||:.||||||||.|:::
  Rat     2 SDNQSWNSSGSEEDPETES---GPPVERCGVLSKWTNYIHGWQDRWVVLKNNTLSYYKSEDETEY 63

  Fly    80 GCRGAISLTKATIKAHESDELRFDVVVNNLNNWCLRAETSEDRMHWVDVLQLYKADSGSTDTTSL 144
            ||||:|.|:||.|..|:.||.|||:.||: :.|.|||:..:.|..|||.::.:|.:||....:||
  Rat    64 GCRGSICLSKAVITPHDFDECRFDISVND-SVWYLRAQDPDHRQQWVDAIEQHKTESGYGSESSL 127

  Fly   145 RRHGSTMSLQSNT--ISLTSGGSLKKTQRNLREKVGELETFKDILFGQIETLQRYFDACSE-VNK 206
            |||||.:||.|..  .|.||..|.|| ..:||||:.|:|||:|||..|::|||:|||.|:: |:|
  Rat   128 RRHGSMVSLVSGASGYSATSTSSFKK-GHSLREKLAEMETFRDILCRQVDTLQKYFDVCADAVSK 191

  Fly   207 NNAQ------------PLDLGD---------------------GLKSIDFKGESITFRATTSGVL 238
            :..|            |....|                     |:..||||||:|||:|||:|:|
  Rat   192 DELQRDKVVEDDEDDFPTTRSDGDFLHNTNGNKEKLFPHVTPKGINGIDFKGEAITFKATTAGIL 256

  Fly   239 TTLQHCLEIIAESDESWKRKLEREIDKRRRSEDQSKKLKDEVEKMKRLSYPGPDFEEGPHSTLPE 303
            .||.||:|::.:.:|||:::.:||::||||.|:..|.:.:|::|..|  :.|||:||||:|.:.|
  Rat   257 ATLSHCIELMVKREESWQKRHDREVEKRRRVEEAYKNVTEELKKKPR--FGGPDYEEGPNSLINE 319

  Fly   304 DEFFDAVETGL---DKIEEDMQ-----LRFKLKLQSQISQTLVNVPHEAVAEGEEAREEFGTGAE 360
            :|||||||..|   |||||..|     |.:...|.|  ..|..:|......:...:|....:..:
  Rat   320 EEFFDAVEAALDRQDKIEEQSQSEKVRLHWPPSLPS--GDTFSSVGTHRFVQKPYSRSPSMSSID 382

  Fly   361 ATS-----HALWPEIDRVCKEQLHYAREGVGQDGNGWQIFADEGEIKMYKREEEVNGLVMDPLKA 420
            ..|     |....:::.:.:..::|:.:.||.|.| ||:..:|||:|:|:||.|.||:|:|||||
  Rat   383 LVSASDDVHRFSSQVEEMVQNHMNYSLQDVGGDAN-WQLVVEEGEMKVYRREVEENGIVLDPLKA 446

  Fly   421 YHTVQGVTAREMCHYFFMPEFRNDWETTLEDCTILEKISADTLLFLQTHKRIWPASQRDAQFWSH 485
            .|.|:|||..|:|:||:..:.|||||||:|:..::|.::.:.::..|||||:|||||||..:.|.
  Rat   447 THAVKGVTGHEVCNYFWNVDVRNDWETTIENFHVVETLADNAIIIYQTHKRVWPASQRDVLYLSA 511

  Fly   486 MRKI---TDNLEPGARDMWVVCNNSTEYAKQESKNGKCVRIFLTVILACQTHL--PEGYVKGQPL 545
            :|||   |:| :|   :.|:|||.|.:: .....|.:|||..:.:.|.|||.:  |||   .|.:
  Rat   512 IRKIPALTEN-DP---ETWIVCNFSVDH-DSAPLNNRCVRAKINIALICQTLVSPPEG---DQEI 568

  Fly   546 NRNDLTCKITYCSVVNPGGWAPASALRAVYKREYPKFLKRFTGYVIDQCKDKPIMF 601
            :|:::.|||||.:.||||||||||.||||.||||||||||||.||.::...|||:|
  Rat   569 SRDNILCKITYVANVNPGGWAPASVLRAVAKREYPKFLKRFTSYVQEKTAGKPILF 624

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
certNP_001286978.1 PH 40..130 CDD:278594 51/89 (57%)
PH_GPBP 42..142 CDD:270100 53/99 (54%)
START_STARD11-like 363..601 CDD:176881 116/247 (47%)
Cert1NP_001102405.1 PH 24..114 CDD:278594 51/90 (57%)
PH_GPBP 26..125 CDD:270100 53/99 (54%)
START_STARD11-like 391..624 CDD:176881 115/241 (48%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166339826
Domainoid 1 1.000 214 1.000 Domainoid score I2661
eggNOG 1 0.900 - - E1_KOG1739
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H4173
Inparanoid 1 1.050 500 1.000 Inparanoid score I1314
OMA 1 1.010 - - QHG52378
OrthoDB 1 1.010 - - D408116at33208
OrthoFinder 1 1.000 - - FOG0006557
OrthoInspector 1 1.000 - - oto97708
orthoMCL 1 0.900 - - OOG6_106305
Panther 1 1.100 - - LDO PTHR10219
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X4792
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1514.770

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