DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment cert and phldb3

DIOPT Version :9

Sequence 1:NP_001286978.1 Gene:cert / 38928 FlyBaseID:FBgn0027569 Length:601 Species:Drosophila melanogaster
Sequence 2:XP_002939188.2 Gene:phldb3 / 100491291 XenbaseID:XB-GENE-6045638 Length:633 Species:Xenopus tropicalis


Alignment Length:630 Identity:105/630 - (16%)
Similarity:205/630 - (32%) Gaps:172/630 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 ESLGASPPSSNEAAAGSQSQSDASEEEEYLD-NSIELRGYLSKWTNYIYGWQPRYIVLKDGTLSY 70
            :|......||.|:....|.::..:|.:..|: ..:::..::||              |:......
 Frog    62 DSTDEEESSSTESVPAQQEKAVGNEVQRCLEAKQLKVMAHISK--------------LEQSLREL 112

  Fly    71 YKSESESDFGCRGAISLTKATIKAHESDELRFDVVVNNLNNWCLRAETSEDRMHWVDVLQLYKAD 135
            .....|.:......::|.:..::..:.:..:.:.::.:|:.     :..|....|.:        
 Frog   113 QLQRRELNIEVEMEVALLEGELRTEKKEMEKEENLIRSLHE-----KLRETERKWQE-------- 164

  Fly   136 SGSTDTTSLRRHGSTMSLQSNTISLTSGGS-LKKTQRNLREKV------------GELETFKDIL 187
              ..|...|:.......::.....::.|.| |:|...:|||::            ..:::|:|:.
 Frog   165 --EKDKDKLKLRDEKKKIKDLEQKISEGKSQLEKQPESLREQLRKNIQEMTETMEAAVKSFEDLE 227

  Fly   188 FGQIETLQRYFDACSEVNKNNAQPLDLGDGLKSIDFKGESITFRATTSGVLTTLQHCLEIIAESD 252
            |.|:|         ||.:::..:........:.|..:...:..|  ...||...:|   |....|
 Frog   228 FQQLE---------SESSRDEERESSYRQISQDISKRQNELNRR--KDKVLRLEEH---IQGAED 278

  Fly   253 ESWKRKLEREIDKRRRSEDQSK------KLKDEVEKMKRLSYPGPDFEEGPHSTL---------- 301
            ::       :::::|.||:.::      |.||::|.:..||.......|.|.|:.          
 Frog   279 QA-------QVERQRLSEENTRVFQSLNKEKDQLESLNALSGKDQGQNEKPQSSTRKALQRTNSL 336

  Fly   302 -----------PEDEFFD------------AVETGLDKIEEDMQLRFKLKLQSQISQTLVNVPHE 343
                       |.|....            |:...:.......|:...:....||:|  ..:|..
 Frog   337 PKRRASAPFVRPTDRPLSLHGNTCLESAGLALHLAVSSNNTGGQIALAISPNLQITQ--ARLPQV 399

  Fly   344 AVAEGEEAREEFGTGAEATSHALWP-----EIDRVC------KEQLHYAREGVGQDGNGWQIFAD 397
            ...:|.. ||:..:.......:..|     ||:|..      ||:|..|||            ..
 Frog   400 DDRKGSN-REKIPSDISTLQLSYGPLPKIAEIERQLREALAEKERLLKARE------------EK 451

  Fly   398 EGEIKMYKREEEVNGLVMDPLKAYHTVQGVTAREMCHYFFMPEFRNDWETTLEDCTILEKISADT 462
            ....:|.:|.|.....|.....|     .|||:..     :||.:.:.|      .:|..:.|..
 Frog   452 RAAKEMTRRLESSQNQVKTEEPA-----PVTAKPA-----LPETKGEPE------KVLSVLRAPA 500

  Fly   463 LLFLQTHKRIWPASQRDAQFWSHMR-----------KITDNLEPGARDMWVVCNNSTE----YAK 512
            .|.|::|..   ||....:...|:|           |:...::.. |..|.|.:....    |..
 Frog   501 PLDLRSHLE---ASGHCVETCPHVRVSPTCCKGYLVKMGGRIKTW-RKRWFVFDRQKRRLAYYTD 561

  Fly   513 QESKNGKCVRIFLTVILACQTHLPEGYVKGQPLNRNDLTCKITYC 557
            ::....|.|..|..:......||...:....|        |:|:|
 Frog   562 KDEVKLKGVIYFQAIEEVYYDHLRSAFKSPHP--------KLTFC 598

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
certNP_001286978.1 PH 40..130 CDD:278594 8/89 (9%)
PH_GPBP 42..142 CDD:270100 9/99 (9%)
START_STARD11-like 363..601 CDD:176881 44/221 (20%)
phldb3XP_002939188.2 Smc <91..>332 CDD:224117 44/290 (15%)
PH-like 528..628 CDD:388408 14/80 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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