DRSC/TRiP Functional Genomics Resources

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Protein Alignment MED24 and lin-25

DIOPT Version :9

Sequence 1:NP_648185.1 Gene:MED24 / 38914 FlyBaseID:FBgn0035851 Length:993 Species:Drosophila melanogaster
Sequence 2:NP_506162.1 Gene:lin-25 / 179732 WormBaseID:WBGene00003011 Length:1139 Species:Caenorhabditis elegans


Alignment Length:1075 Identity:193/1075 - (17%)
Similarity:392/1075 - (36%) Gaps:277/1075 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 GVSGDVYNLADCLMQQALIGSTANPLVLNYLKHSLCAHLVSHAAVIRCIAKYDKLERVYCITALL 99
            |:|  ...|.|.|::.|..|:..:.:..::|...:....::...||..:.. .|.:|:|......
 Worm    42 GIS--TQQLCDILIRFAYNGTYIDDVFRDHLLKLVVDKSITWNQVIHSVIN-TKTDRIYSKCLQC 103

  Fly   100 EFLASIVDGVTCRIKSEEA---VLPSSVVHLVYWLLQIFARTV---QHYEL----YGEI------ 148
            |.:..:|:.|..:..|::.   .|.|.:...|::|.|:....:   ...|:    ||::      
 Worm   104 ELIREMVNYVQIKSFSDKLHADELISIMKPTVFFLAQLIQDVLSDEDELEMIQIEYGDVRKAYYK 168

  Fly   149 --SAEQSYMLDQTCVVIDRLSQQQFLLSMLYVGCHEELEICGRIRDKYATIKGSLTNSNFTLNAP 211
              .|..:::.|..|..:...|:...:.        .:||:|   ||.::.:: |...|..||...
 Worm   169 PLEALSAFIHDDLCSSLLAFSEASEIT--------HQLELC---RDSFSKLR-SPDKSATTLVEM 221

  Fly   212 QVEQQLQQLAFIEAKHLEMQPLNPPSTLEKISCCVQPLLAVEVLLNPC---KDTSYYVAE-LQML 272
            .:|:.::     :.|.::.|.:.....|..:.   .|.:.:.:.:..|   .::|..:|| :|..
 Worm   222 LIERHIE-----KCKPVKFQYIPEGIALFDLK---NPSIRILIPIFACFKNHESSKLMAETIQTF 278

  Fly   273 QRLKKYSNTRLFYEIIRAGFL--------TLSNVADTSPDTMWGAFMFF--KMPHIIKQLHALQR 327
            ..:.::....:.::|:....|        .|........|..|.:..||  |:|.||:.|...::
 Worm   279 AEIMRFYGPDVIFDILHGAILLKCEESMDLLHFPKQHRADFRWQSTTFFYKKLPQIIEYLIRSEK 343

  Fly   328 IPGEQPPPADYIPELVEALELLIED-NLLLDFMDTKCSCNMIEFLLNDWTK---QQLVNDVHVKK 388
            :.         :.|:...||..:.| :::.|..|..........|||:...   :.:.:.:.:::
 Worm   344 LT---------VAEVQFGLEKALTDLSMMFDAADVAWQNASFLTLLNELEPVLGKTITDPLRLRR 399

  Fly   389 FASQREAASQLLKKCDNGQQTPSNINFIKRAEVPLSGVLKTLCTNKVQDMVNV------------ 441
             ....:...|||...|...|...|.:..|             ..|.|::::|:            
 Worm   400 -REHMKTNDQLLPFADTDNQLIENTDIDK-------------LLNAVKEVMNLQFGQTEEFSKLF 450

  Fly   442 LCQVPVG--NSFELILSVATVEGRL----KTFVSRLIQCNENSKPVPGDLGKLCVIRSTLFDVSF 500
            :.:|..|  ::|:.|.|:...||||    |.||.:.::...:|.....:       |..:||.:|
 Worm   451 VDKVKTGQTDNFDAITSILITEGRLMEVGKAFVLKNVEAQRSSAVGVNE-------RIQIFDDTF 508

  Fly   501 LMLTSIVQTYGSDVV---------LSERGDSFFEKWVRECMVERNKLKNP--------------- 541
            ::|:.|:....|..:         .|:...:.|.||....:....|.::|               
 Worm   509 ILLSRILIKNPSVSINMFVNGGPGKSDAEQTMFYKWSMRYVKRVAKHRDPEPKDETEYIALRKEV 573

  Fly   542 RQILALCDDSI-VDELLLSFSKPEASQLKPNNLSWQETC-LNLPGVLHHVL------IAWEQET- 597
            ..::.|.:..: :::.|.:..:.|..:::..|:..|... :::|..||.::      .|..:|| 
 Worm   574 EMLMRLANAEVGIEDDLENDVEEEMPEVQEPNIETQNVDEISIPDPLHLLIENDPTVTAESKETE 638

  Fly   598 ---LSSADVKSILDNIKRRLFSFSVCATSFLCAYMYSVKETELLKPLNMIQQFLAPLTSEELSSQ 659
               .:...|:.:..|.|....|.|:            ::.|.|.:|.::::..:.|:...|....
 Worm   639 EVKFNPEGVEQMDTNEKPAEISDSL------------IEPTLLEEPKDILENIIVPIIKVEAPKP 691

  Fly   660 ENAKERLALSYQIIRKMQ------HDVH-PAPSTKSRLISHSPLVEQFRE---VWRTVVDAGHLP 714
            ::.          |:|.:      |:|| |.|....|  :....:.|.:|   .|:|  |..:|.
 Worm   692 DSP----------IKKKKDPDVTWHEVHCPLPRISRR--TARAYLAQMKEGIPFWKT--DDPNLN 742

  Fly   715 VRAAQSLESLLLAGGAAWLSTQLVEQLLACKYTRDMSRTMDVVFAVMHLDIEKTTEALLQYVVAP 779
            :             |:...:...:.|||..::....:|          :|.:...|.:...:.| 
 Worm   743 I-------------GSILAAIPRLGQLLVDEHEEKRNR----------IDRKSAEENMTNILHA- 783

  Fly   780 LILRRQGEDINEPQSLVLARLCVYCIISCLESRKGNGTSALTAMKKRSRSHDDEELAANA----- 839
                     |....||.|      |::..|:....:|  |.|::........:..||.:.     
 Worm   784 ---------IESMPSLFL------CLLEWLDCEPESG--ARTSLAFTINLSLERYLAVSTHGINY 831

  Fly   840 -------AKVRKVIGDGSDNSSDFTDTTTGAGLAALLGSTSTSELRTTPLTLR--EPLQTSVQHI 895
                   :.|:::|.:..|.|..|.:.|..|        .||:. |..|...|  .|.|..::|.
 Worm   832 MKWIFIKSTVQQMIDELVDKSPAFPEVTCTA--------FSTAR-RFCPFVGRNENPDQLKLKHA 887

  Fly   896 FAVFLQFVSGDELSPKA--------------VFVYQFISLLVECG-GERVAPVLRLLPNGLVQQL 945
            :....|....   ||.|              |:.:.:||..::.| |:        :....|..:
 Worm   888 WYYMRQQAWA---SPHALRLLEHANTAREYDVWSHIYISKTIKSGCGD--------IMTSSVDMI 941

  Fly   946 LKVLVTDDIKVGLISRLYD------LRIQAGRLSA 974
            ...|:.||:  ..|.|:::      |...||:..|
 Worm   942 FSFLMLDDL--NSIIRIHESLMAFWLSEDAGQCQA 974

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MED24NP_648185.1 Med24_N 3..979 CDD:288171 193/1075 (18%)
lin-25NP_506162.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D323841at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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