DRSC/TRiP Functional Genomics Resources

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Protein Alignment Atg18a and ATG18C

DIOPT Version :9

Sequence 1:NP_001261565.1 Gene:Atg18a / 38913 FlyBaseID:FBgn0035850 Length:447 Species:Drosophila melanogaster
Sequence 2:NP_181613.2 Gene:ATG18C / 818678 AraportID:AT2G40810 Length:393 Species:Arabidopsis thaliana


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Atg18aNP_001261565.1 WD40 <15..278 CDD:225201
WD40 23..269 CDD:295369
WD40 repeat 143..180 CDD:293791
WD40 repeat 186..231 CDD:293791
WD40 repeat 232..258 CDD:293791
ATG18CNP_181613.2 WD40 20..>276 CDD:225201
WD40 repeat 34..70 CDD:293791
WD40 35..274 CDD:295369
WD40 repeat 76..117 CDD:293791
WD40 repeat 162..199 CDD:293791
WD40 repeat 204..242 CDD:293791
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54442
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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