DRSC/TRiP Functional Genomics Resources

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Protein Alignment Atg18a and wipi2

DIOPT Version :9

Sequence 1:NP_001261565.1 Gene:Atg18a / 38913 FlyBaseID:FBgn0035850 Length:447 Species:Drosophila melanogaster
Sequence 2:NP_001314718.1 Gene:wipi2 / 437002 ZFINID:ZDB-GENE-040718-488 Length:427 Species:Danio rerio


Alignment Length:401 Identity:232/401 - (57%)
Similarity:290/401 - (72%) Gaps:21/401 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 VFVNFNQNITSLAVATSGGYSLYSLGSVDSTLDKIYH-TKSDELFLIERLFESSLVAIVSQRAPR 78
            :|.||||:.|||||.|..||..:||.|||. |::||. |.::::.::||||.||||||||.:|||
Zfish    16 LFANFNQDNTSLAVGTKSGYKFFSLSSVDK-LEQIYECTDTEDVCIVERLFSSSLVAIVSLKAPR 79

  Fly    79 KLKVCHFKKQSEICNYSYANTILAVKLNRERLIVCLEESLYIHNIQDMKVVHTIRDTPCNPQGLC 143
            |||||||||.:|||||||:||||||||||:|||||||||||||||:||||:||||:||.||.|||
Zfish    80 KLKVCHFKKGTEICNYSYSNTILAVKLNRQRLIVCLEESLYIHNIRDMKVLHTIRETPPNPSGLC 144

  Fly   144 ALSSSSEHCYLAYPGSVTAGEVQIFDAINLHAKTMIPAHDTPLAALAFSPSGTEIATASERGTVI 208
            |||.|:::||||||||.|.||||:||.:||.|..||||||:|||||||..|||::|||||:||||
Zfish   145 ALSISNDNCYLAYPGSATIGEVQVFDTVNLRAANMIPAHDSPLAALAFDASGTKLATASEKGTVI 209

  Fly   209 RVFSSQDGSRLFELRRGLKRCVSIVSLSFSTCAEYLVSSSNTETVHIFRLDRSATETAEGHGSKQ 273
            ||||..:|.:|||.|||:||||||.||:||....||.:||||||||||:|:....::.    .::
Zfish   210 RVFSIPEGQKLFEFRRGVKRCVSICSLAFSMEGLYLSASSNTETVHIFKLETQREKSV----PQE 270

  Fly   274 SSDDWMGYSFFRFLSKTVTSYLPTQVTDVFSQGRAFASVTLPEAGVRRMCAIATIQKQLRLLIAS 338
            ....|.|| |.:.|..: |:|||..||::|:||||||:|.||.:|.:.:||:|.|||..|||:|:
Zfish   271 EPTTWTGY-FGKVLMAS-TTYLPAHVTEMFTQGRAFATVRLPFSGHKNICALAIIQKIPRLLVAA 333

  Fly   339 QDGYLYVYSIPTVEGAECQLIKRHDLRLEDHYAMDI----KVDSP---QTLGLNSGVSIGGAAGV 396
            .|||||:|::...||.||.|:|:|.|......|.:|    ..|.|   ||      .|...|.|.
Zfish   334 ADGYLYLYNLDPQEGGECTLMKQHKLDGSAEPANEILEQTAHDRPLVAQT------YSAAVAKGY 392

  Fly   397 PPSSASAAGAG 407
            .....:..|||
Zfish   393 SEDQGAVGGAG 403

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Atg18aNP_001261565.1 WD40 <15..278 CDD:225201 174/263 (66%)
WD40 23..269 CDD:295369 169/246 (69%)
WD40 repeat 143..180 CDD:293791 24/36 (67%)
WD40 repeat 186..231 CDD:293791 32/44 (73%)
WD40 repeat 232..258 CDD:293791 17/25 (68%)
wipi2NP_001314718.1 WD40 <21..261 CDD:225201 171/240 (71%)
WD40 repeat 58..99 CDD:293791 31/40 (78%)
WD40 <121..267 CDD:295369 100/145 (69%)
WD40 repeat 144..181 CDD:293791 24/36 (67%)
WD40 180..>343 CDD:225201 96/168 (57%)
WD40 repeat 187..224 CDD:293791 26/36 (72%)
WD40 repeat 231..259 CDD:293791 19/27 (70%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 428 1.000 Domainoid score I582
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 428 1.000 Inparanoid score I1709
OMA 1 1.010 - - QHG54442
OrthoDB 1 1.010 - - D1216824at2759
OrthoFinder 1 1.000 - - FOG0001466
OrthoInspector 1 1.000 - - otm26398
orthoMCL 1 0.900 - - OOG6_103112
Panther 1 1.100 - - LDO PTHR11227
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R106
SonicParanoid 1 1.000 - - X1186
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1313.010

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