DRSC/TRiP Functional Genomics Resources

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Protein Alignment Atg18a and wdr45

DIOPT Version :10

Sequence 1:NP_001261565.1 Gene:Atg18a / 38913 FlyBaseID:FBgn0035850 Length:447 Species:Drosophila melanogaster
Sequence 2:NP_956525.1 Gene:wdr45 / 393200 ZFINID:ZDB-GENE-040426-990 Length:358 Species:Danio rerio


Alignment Length:386 Identity:97/386 - (25%)
Similarity:170/386 - (44%) Gaps:69/386 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 VNFNQNITSLAVATSGGYSLYSLGSVDSTLDK--IYHTKSDELFLIERLFESSLVAIVSQRAPRK 79
            :.|||:.:....|...|..:|   :|:..::|  :.|.:...:.|...|..|:|:|:|......|
Zfish    10 LQFNQDQSCFCCAMETGVRIY---NVEPLMEKGHLDHEQVGSIALCSMLHRSNLLAVVGGGVNPK 71

  Fly    80 L-----------KVCHFKKQSEICNYSYANTILAVKLNRERLIVCLEESLYIHNIQDMKVVHTIR 133
            .           :.....|...:..:::...:|||::..:::|:.|:..:|:::..|..|.....
Zfish    72 FSEISVLIWDDAREVRDPKDKLVLEFTFTKPVLAVRMRHDKIIIILKNRIYVYSFPDNPVKLFEF 136

  Fly   134 DTPCNPQGLCALSSSSEHCYLAYPGSVTAGEVQIFDAINLHAKT-----MIPAHDTPLAALAFSP 193
            ||..||:|||.|..|.|...|.:||. ..|.:|:.|..|....|     .|.||.:.:|.||.:.
Zfish   137 DTRDNPKGLCDLCPSLEKQLLVFPGH-KCGSLQLVDLSNTKPGTSSAPFTINAHQSEIACLALNQ 200

  Fly   194 SGTEIATASERGTVIRVFSSQDGSRLFELRRGLKRCVSIVSLSFSTCAEYLVSSSNTETVHIF-- 256
            .|:.:|:||.:||:||:|.:....:|.|||||... .::..::||..:.:|.:||:..|||||  
Zfish   201 PGSVVASASRKGTLIRLFDTTTRDKLVELRRGTDP-ATLYCINFSHDSSFLCASSDKGTVHIFAL 264

  Fly   257 ---RLDRSATETAEGHGSKQSSDDWMGYSFFRFLSKTVTSYLPTQVTDVFSQGRAFASVTLPEAG 318
               :|:|.:.....|.                 :...:..|:.:|        .:.|:.|:| |.
Zfish   265 KDTKLNRRSALARVGK-----------------VGPVIGQYVDSQ--------WSLANFTVP-AE 303

  Fly   319 VRRMCAIA-TIQKQLRLLIA-SQDGYLYVYSIPTVEGAECQLIKRHDLRLEDHYAMDIKVD 377
            ...:||.. ...|.:..:|| ..||..:.| :.|.:| .|           :..|.|:.:|
Zfish   304 CACICAFGKNTSKNVNSVIAICVDGTFHKY-VFTPDG-NC-----------NREAFDVYLD 351

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Atg18aNP_001261565.1 WD40 23..269 CDD:475233 73/268 (27%)
WD40 repeat 143..180 CDD:293791 12/41 (29%)
WD40 <160..>271 CDD:441893 39/120 (33%)
WD40 repeat 186..231 CDD:293791 18/44 (41%)
WD40 repeat 232..258 CDD:293791 10/30 (33%)
wdr45NP_956525.1 WD 1 2..40 8/32 (25%)
WD40 6..262 CDD:475233 72/256 (28%)
WD 2 188..228 15/39 (38%)
WD40 repeat 194..231 CDD:293791 15/36 (42%)
L/FRRG motif. /evidence=ECO:0000250|UniProtKB:Q9Y4P8 229..232 2/2 (100%)
WD 3 233..272 11/39 (28%)

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