DRSC/TRiP Functional Genomics Resources

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Protein Alignment Atg18a and Wdr45b

DIOPT Version :10

Sequence 1:NP_001261565.1 Gene:Atg18a / 38913 FlyBaseID:FBgn0035850 Length:447 Species:Drosophila melanogaster
Sequence 2:NP_001034676.1 Gene:Wdr45b / 360682 RGDID:1305141 Length:344 Species:Rattus norvegicus


Alignment Length:363 Identity:103/363 - (28%)
Similarity:169/363 - (46%) Gaps:57/363 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 MSLLGRTDVDAGEVFVNFNQNITSLAVATSGGYSLYSLGSVDSTLDKIYHTKSDELFL------I 60
            |:||.......|.::..|||:....|.....|:.:|:...:..        |..:.||      :
  Rat     1 MNLLPCNPHGNGLLYAGFNQDHGCFACGMENGFRVYNTDPLKE--------KEKQEFLEGGVGHV 57

  Fly    61 ERLFESSLVAIVS-----QRAPRKLKVCHFKKQSEICNYSYANTILAVKLNRERLIVCLEESL-- 118
            |.||..:.:|:|.     :..|.|:.:....|:..:....::..:.||||.|:|::|.|:..:  
  Rat    58 EMLFRCNYLALVGGGKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKV 122

  Fly   119 --YIHNIQDMKVVHTIRDTPC-NPQGLCALSSSSEHCYLAYPGSVTAGEVQIFDAINLHAKTM-I 179
              :.||...:.|..|     | ||:|||.|..:|.:..||:||:.| |.||:.|..:.....: |
  Rat   123 FTFTHNPHQLHVFET-----CYNPKGLCVLCPNSNNSLLAFPGTHT-GHVQLVDLASTEKPPVDI 181

  Fly   180 PAHDTPLAALAFSPSGTEIATASERGTVIRVFSSQDGSRLFELRRGLKRCVSIVSLSFSTCAEYL 244
            |||:..|:.:|.:..||.||||||:||:||:|.:..|..:.||||| .:..:|..::|:..|..:
  Rat   182 PAHEGVLSCIALNLQGTRIATASEKGTLIRIFDTSSGHLIQELRRG-SQAANIYCINFNQDASLI 245

  Fly   245 VSSSNTETVHIFRLDRSATETAEGHGSKQSSDDWMGYSFFRFLSKTVTSYLPTQVTDVFSQGRAF 309
            ..||:..|||||..:       :...:|||             |....|:||    ..||...:|
  Rat   246 CVSSDHGTVHIFAAE-------DPKRNKQS-------------SLASASFLP----KYFSSKWSF 286

  Fly   310 ASVTLPEAGVRRMCAIATIQKQLRLLIASQDGYLYVYS 347
            :...:| :|...:||..|....:..:.|....|.:::|
  Rat   287 SKFQVP-SGSPCICAFGTEPNAVIAICADGSYYKFLFS 323

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Atg18aNP_001261565.1 WD40 23..269 CDD:475233 78/262 (30%)
WD40 repeat 143..180 CDD:293791 12/37 (32%)
WD40 <160..>271 CDD:441893 40/111 (36%)
WD40 repeat 186..231 CDD:293791 21/44 (48%)
WD40 repeat 232..258 CDD:293791 10/25 (40%)
Wdr45bNP_001034676.1 WD40 <25..258 CDD:475233 77/247 (31%)
WD40 repeat 102..126 CDD:293791 8/23 (35%)
WD40 repeat 145..183 CDD:293791 13/38 (34%)
WD40 <152..>264 CDD:441893 44/120 (37%)
WD40 repeat 188..225 CDD:293791 17/36 (47%)
WD40 repeat 234..267 CDD:293791 9/39 (23%)

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