DRSC/TRiP Functional Genomics Resources

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Protein Alignment Atg18a and Atg18b

DIOPT Version :9

Sequence 1:NP_001261565.1 Gene:Atg18a / 38913 FlyBaseID:FBgn0035850 Length:447 Species:Drosophila melanogaster
Sequence 2:NP_001260667.1 Gene:Atg18b / 35396 FlyBaseID:FBgn0032935 Length:471 Species:Drosophila melanogaster


Alignment Length:456 Identity:195/456 - (42%)
Similarity:274/456 - (60%) Gaps:62/456 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 VNFNQNITSLAVATSGGYSLYSLGSVDSTLDKIYHTKSDELFLIERLFESSLVAIVSQRAPRKLK 81
            :||||:.|||:|.:..|..|:|:.|.|...:......::::.::||||.||||.:|:.:.|..||
  Fly     6 MNFNQDFTSLSVLSPTGLRLFSISSQDKVEEIFAKDNTEQIRIVERLFNSSLVVLVTAQKPNCLK 70

  Fly    82 VCHFKKQSEICNYSYANTILAVKLNRERLIVCLEESLYIHNIQDMKVVHTIRDTPCNPQGLCALS 146
            :.||||:.:|||..|.:.||.|::||:||||||.||::||:|:|||::|:|.:...|.|||||||
  Fly    71 MLHFKKKQDICNCFYPSEILCVRMNRQRLIVCLAESIHIHDIRDMKILHSIENIAPNEQGLCALS 135

  Fly   147 SSSEHCYLAYPGSVTAGEVQIFDAINLHAKTMIPAHDTPLAALAFSPSGTEIATASERGTVIRVF 211
            .:|   :||:|...|:||::||:|..|.....|.||||.|:||||||||..:|||||||||||||
  Fly   136 LNS---HLAFPVCQTSGELRIFNASKLRTGMTIRAHDTSLSALAFSPSGALLATASERGTVIRVF 197

  Fly   212 SSQDGSRLFELRRGLKRCVSIVSLSFSTCAEYLVSSSNTETVHIFRLDRSATETAE-------GH 269
            ..::|.|:.|.|||:. ||.|.||.||...::|.:||||||||:|::|..|.||.|       ..
  Fly   198 CVKNGQRVQEFRRGVS-CVRIASLVFSASGDFLCASSNTETVHVFKIDTRAVETVELKAIADVAA 261

  Fly   270 GSKQSSDD----------------WMGYSFFRFLSKTVTS-YLPTQVTDVFSQGRAFASVTLPEA 317
            .|:.|:.:                |.|     ..||.|:| .|||||::|.:|.|:||:|.|.:.
  Fly   262 KSENSAKEAVASTAAEESCRPVASWGG-----MFSKAVSSLLLPTQVSEVLAQDRSFATVQLAQG 321

  Fly   318 GVRRMCAIATIQKQLRLLIASQDGYLYVYSIPTVEGAECQLIKRHDLR--LEDHYAMDI--KVDS 378
            |::.:||:..:||:.|||||.:||:|||:..|...|..|:|:..||||  |||...:::  .|..
  Fly   322 GLKHICALTRVQKEPRLLIACEDGFLYVHEFPAERGGPCKLMSVHDLRGALEDVIELELSESVQR 386

  Fly   379 PQTLGLNSGVSIGGAAGVPPSSASAAGAGTGGSGGDGKS-AVSVTGGVDKP----SSSYASAVKG 438
            .||               .||:.|..   |..|....|| |.||.  ::.|    .:||||.:||
  Fly   387 SQT---------------KPSNPSTV---TQPSLTMLKSCAASVL--IENPDPMQDNSYASILKG 431

  Fly   439 D 439
            |
  Fly   432 D 432

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Atg18aNP_001261565.1 WD40 <15..278 CDD:225201 130/283 (46%)
WD40 23..269 CDD:295369 124/252 (49%)
WD40 repeat 143..180 CDD:293791 15/36 (42%)
WD40 repeat 186..231 CDD:293791 29/44 (66%)
WD40 repeat 232..258 CDD:293791 15/25 (60%)
Atg18bNP_001260667.1 WD40 <9..281 CDD:225201 128/275 (47%)
WD40 repeat 79..122 CDD:293791 24/42 (57%)
WD40 <89..242 CDD:295369 89/156 (57%)
WD40 repeat 130..166 CDD:293791 17/38 (45%)
WD40 repeat 172..208 CDD:293791 24/35 (69%)
WD40 repeat 212..257 CDD:293791 22/45 (49%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 146 1.000 Domainoid score I1135
eggNOG 1 0.900 - - E1_KOG2110
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 270 1.000 Inparanoid score I1825
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54442
OrthoDB 1 1.010 - - D1216824at2759
OrthoFinder 1 1.000 - - FOG0001466
OrthoInspector 1 1.000 - - otm14677
orthoMCL 1 0.900 - - OOG6_103112
Panther 1 1.100 - - P PTHR11227
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1186
1110.880

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