DRSC/TRiP Functional Genomics Resources

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Protein Alignment Atg18a and Wipi1

DIOPT Version :9

Sequence 1:NP_001261565.1 Gene:Atg18a / 38913 FlyBaseID:FBgn0035850 Length:447 Species:Drosophila melanogaster
Sequence 2:XP_038942100.1 Gene:Wipi1 / 303630 RGDID:1307754 Length:467 Species:Rattus norvegicus


Alignment Length:462 Identity:190/462 - (41%)
Similarity:273/462 - (59%) Gaps:82/462 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 GRTDVDAGEVFVNFNQNIT---------------------SLAVATSGGYSLYSLGSVDSTLDKI 49
            ||  |:|.....:|||:.|                     |||:.|..||.|:||.||:. ||::
  Rat    11 GR--VEAALSCFSFNQDCTSMRYTTPGPPTCPGMAPPTVGSLAIGTKTGYKLFSLSSVEQ-LDQV 72

  Fly    50 YHTKS-DELFLIERLFESSLVAIVSQRAPRKLKVCHFKKQSEICNYSYANTILAVKLNRERLIVC 113
            :.:.. .:::::||||.||||.:||...||::.|.||||.:|||||.|::.||:::|||:||:||
  Rat    73 HGSNEIPDVYIVERLFSSSLVVVVSHTKPRQMNVYHFKKGTEICNYCYSSNILSIRLNRQRLLVC 137

  Fly   114 LEESLYIHNIQDMKVVHTIRDTPCNPQGLCALSSSSEHCYLAYPGSVTAGEVQIFDAINLHAKTM 178
            ||||:|||||:|||::.|:.|.|.||.||||||.:..:.|||||||.:.||:.::|..:|.....
  Rat   138 LEESIYIHNIKDMKLLKTLLDIPSNPTGLCALSINHSNSYLAYPGSQSTGEIVLYDGNSLKMVCT 202

  Fly   179 IPAHDTPLAALAFSPSGTEIATASERGTVIRVFSSQDGSRLFELRRGLKRCVSIVSLSFSTCAEY 243
            |.||:..|||:.|:.||:::|:|||:||||||||..:|.:|:|.|||:||.|:|.||.||..:::
  Rat   203 IAAHEGTLAAITFNSSGSKLASASEKGTVIRVFSVPEGQKLYEFRRGMKRYVTISSLVFSMDSQF 267

  Fly   244 LVSSSNTETVHIFRLDRSATETAEGHGSKQSSDDWMGYSFFRFLSK---TVTSYLPTQVTDVFSQ 305
            |.:||||||||||:|::......|      ....|.||     :.|   ..|:|||.||:|:.:|
  Rat   268 LCASSNTETVHIFKLEQLTDSRPE------EPSTWSGY-----MGKMLTAATNYLPAQVSDMMNQ 321

  Fly   306 GRAFASVTLPEAGVRRMCAIATIQKQLRLLIASQDGYLYVYSIPTVEGAECQLIKRHDL----RL 366
            .||||:..|..:|.:.:|.::||||..|||:||.||:||:|::...:|.||.|||.|.|    ..
  Rat   322 DRAFATGRLNFSGQKNICTLSTIQKLPRLLVASSDGHLYIYNLDPQDGGECVLIKTHSLLSSGTA 386

  Fly   367 EDHYAMDIKVDSPQTLGLNSGVSIGGAAGVPPSSASAAGAGTGGSGGDGKSAVSVTGGVDKPSSS 431
            |::...|::                  ..:|||.|:.                     |.:||:|
  Rat   387 EENKENDLR------------------PSLPPSYAAT---------------------VARPSAS 412

  Fly   432 YASAVKG 438
            .||.|.|
  Rat   413 TASTVPG 419

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Atg18aNP_001261565.1 WD40 <15..278 CDD:225201 131/284 (46%)
WD40 23..269 CDD:295369 128/267 (48%)
WD40 repeat 143..180 CDD:293791 15/36 (42%)
WD40 repeat 186..231 CDD:293791 26/44 (59%)
WD40 repeat 232..258 CDD:293791 16/25 (64%)
Wipi1XP_038942100.1 WD40 <98..>365 CDD:225201 137/277 (49%)
WD40 repeat 165..205 CDD:293791 18/39 (46%)
WD40 repeat 210..247 CDD:293791 21/36 (58%)
WD40 repeat 257..286 CDD:293791 16/28 (57%)
WD40 repeat 293..333 CDD:293791 17/44 (39%)
WD40 repeat 341..379 CDD:293791 20/37 (54%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166335662
Domainoid 1 1.000 424 1.000 Domainoid score I597
eggNOG 1 0.900 - - E1_KOG2110
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 424 1.000 Inparanoid score I1708
OMA 1 1.010 - - QHG54442
OrthoDB 1 1.010 - - D1216824at2759
OrthoFinder 1 1.000 - - FOG0001466
OrthoInspector 1 1.000 - - otm45547
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11227
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1186
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1312.870

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