DRSC/TRiP Functional Genomics Resources

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Protein Alignment Atg18a and Wipi2

DIOPT Version :9

Sequence 1:NP_001261565.1 Gene:Atg18a / 38913 FlyBaseID:FBgn0035850 Length:447 Species:Drosophila melanogaster
Sequence 2:NP_001007616.1 Gene:Wipi2 / 288498 RGDID:1359154 Length:445 Species:Rattus norvegicus


Alignment Length:453 Identity:241/453 - (53%)
Similarity:308/453 - (67%) Gaps:41/453 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 MSLLGRT-DVDAGE-VFVNFNQNITSLAVATSGGYSLYSLGSVDSTLDKIYH-TKSDELFLIERL 63
            |:|..:: :..||: :|.||||:.|||||.:..||..:||.|||. |::||. |.::::.::|||
  Rat     1 MNLASQSGEAGAGQLLFANFNQDNTSLAVGSKSGYKFFSLSSVDK-LEQIYECTDTEDVCIVERL 64

  Fly    64 FESSLVAIVSQRAPRKLKVCHFKKQSEICNYSYANTILAVKLNRERLIVCLEESLYIHNIQDMKV 128
            |.||||||||.:||||||||||||.:|||||||:||||||||||:|||||||||||||||:||||
  Rat    65 FSSSLVAIVSLKAPRKLKVCHFKKGTEICNYSYSNTILAVKLNRQRLIVCLEESLYIHNIRDMKV 129

  Fly   129 VHTIRDTPCNPQGLCALSSSSEHCYLAYPGSVTAGEVQIFDAINLHAKTMIPAHDTPLAALAFSP 193
            :||||:||.||.||||||.::::||||||||.|.||||:||.|||.|..||||||:|||||||..
  Rat   130 LHTIRETPPNPAGLCALSINNDNCYLAYPGSATIGEVQVFDTINLRAANMIPAHDSPLAALAFDA 194

  Fly   194 SGTEIATASERGTVIRVFSSQDGSRLFELRRGLKRCVSIVSLSFSTCAEYLVSSSNTETVHIFRL 258
            |||::|||||:||||||||..:|.:|||.|||:||||||.||:||....:|.:||||||||||:|
  Rat   195 SGTKLATASEKGTVIRVFSIPEGQKLFEFRRGVKRCVSICSLAFSMDGMFLSASSNTETVHIFKL 259

  Fly   259 DRSATETAEGHGSKQSSDDWMGYSFFRFLSKTVTSYLPTQVTDVFSQGRAFASVTLPEAGVRRMC 323
            :....:..|      ....|.|| |.:.|..: |||||:|||::|:||||||:|.||..|.:.:|
  Rat   260 EAVREKPPE------EPTTWTGY-FGKVLMAS-TSYLPSQVTEMFNQGRAFATVRLPFCGHKNIC 316

  Fly   324 AIATIQKQLRLLIASQDGYLYVYSIPTVEGAECQLIKRHDLRLEDHYAMDIKVDS--------PQ 380
            ::.||||..|||:.:.|||||:|::...||.||.|:::|.|........:| |||        .|
  Rat   317 SLTTIQKIPRLLVGASDGYLYMYNLDPQEGGECALMRQHRLDGSMETTSEI-VDSASHDCPLVTQ 380

  Fly   381 TLGLNSGVSIGGAAGVPPSSASAAGAG-----------TGGSGG----DGKSAVSVTGGVDKP 428
            |.|     :........|||.:..|.|           .|..||    |..||:.:....:.|
  Rat   381 TYG-----TAAAKGAYVPSSPTRLGKGQDANLEAYTDDLGAVGGACLEDEASALRLDEDSEHP 438

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Atg18aNP_001261565.1 WD40 <15..278 CDD:225201 173/263 (66%)
WD40 23..269 CDD:295369 168/246 (68%)
WD40 repeat 143..180 CDD:293791 24/36 (67%)
WD40 repeat 186..231 CDD:293791 32/44 (73%)
WD40 repeat 232..258 CDD:293791 16/25 (64%)
Wipi2NP_001007616.1 WD40 <21..272 CDD:225201 170/257 (66%)
WD40 repeat 143..182 CDD:293791 26/38 (68%)
WD 1. /evidence=ECO:0000255 182..222 28/39 (72%)
WD40 repeat 188..228 CDD:293791 28/39 (72%)
FRRG motif. /evidence=ECO:0000250|UniProtKB:Q9Y4P8 223..226 1/2 (50%)
WD 2. /evidence=ECO:0000255 228..267 22/38 (58%)
WD40 repeat 233..266 CDD:293791 17/32 (53%)
WD40 repeat 274..309 CDD:293791 21/36 (58%)
WD 3. /evidence=ECO:0000255 311..349 17/37 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 424 1.000 Domainoid score I597
eggNOG 1 0.900 - - E1_KOG2110
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H90887
Inparanoid 1 1.050 424 1.000 Inparanoid score I1708
OMA 1 1.010 - - QHG54442
OrthoDB 1 1.010 - - D1216824at2759
OrthoFinder 1 1.000 - - FOG0001466
OrthoInspector 1 1.000 - - otm45547
orthoMCL 1 0.900 - - OOG6_103112
Panther 1 1.100 - - LDO PTHR11227
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1186
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1413.880

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