DRSC/TRiP Functional Genomics Resources

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Protein Alignment Atg18a and wipi2

DIOPT Version :10

Sequence 1:NP_001261565.1 Gene:Atg18a / 38913 FlyBaseID:FBgn0035850 Length:447 Species:Drosophila melanogaster
Sequence 2:XP_031748991.1 Gene:wipi2 / 100497399 XenbaseID:XB-GENE-6084294 Length:435 Species:Xenopus tropicalis


Alignment Length:327 Identity:205/327 - (62%)
Similarity:255/327 - (77%) Gaps:13/327 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 LGRTDVDAGEV---FVNFNQNITSLAVATSGGYSLYSLGSVDSTLDKIYH-TKSDELFLIERLFE 65
            |.....:||.|   |.||||:.|||||.:..||..:||.|||. |::||. ..::::.::||||.
 Frog     3 LASQSAEAGAVQLLFANFNQDNTSLAVGSKSGYKFFSLSSVDK-LEQIYECNDTEDVCIVERLFS 66

  Fly    66 SSLVAIVSQRAPRKLKVCHFKKQSEICNYSYANTILAVKLNRERLIVCLEESLYIHNIQDMKVVH 130
            ||||||||.:||||||||||||.:|||||||:||||||||||:|||||||||||||||:||||:|
 Frog    67 SSLVAIVSLKAPRKLKVCHFKKGTEICNYSYSNTILAVKLNRQRLIVCLEESLYIHNIRDMKVLH 131

  Fly   131 TIRDTPCNPQGLCALSSSSEHCYLAYPGSVTAGEVQIFDAINLHAKTMIPAHDTPLAALAFSPSG 195
            |||:||.||.||||||.:.|:||||||||.:.||||:||.:||.|..||||||:|||||||..||
 Frog   132 TIRETPPNPSGLCALSINGENCYLAYPGSASIGEVQVFDTVNLRAANMIPAHDSPLAALAFDASG 196

  Fly   196 TEIATASERGTVIRVFSSQDGSRLFELRRGLKRCVSIVSLSFSTCAEYLVSSSNTETVHIFRLDR 260
            |::|||||:||||||||..:|.:|||.|||:||||||.||:||..:.:|.:||||||||||:|  
 Frog   197 TKLATASEKGTVIRVFSIPEGQKLFEFRRGVKRCVSICSLAFSMDSIFLSASSNTETVHIFKL-- 259

  Fly   261 SATETAEGHGSKQSSDDWMGYSFFRFLSKTVTSYLPTQVTDVFSQGRAFASVTLPEAGVRRMCAI 325
               ||.:...|::.: .|.|| |.|.:..: |||||:|||::|:||||||:|.||..|.:.:||:
 Frog   260 ---ETIKEKPSEEPT-SWTGY-FGRVIMAS-TSYLPSQVTEMFNQGRAFATVRLPFCGHKNICAL 318

  Fly   326 AT 327
            ||
 Frog   319 AT 320

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Atg18aNP_001261565.1 WD40 23..269 CDD:475233 167/246 (68%)
WD40 repeat 143..180 CDD:293791 23/36 (64%)
WD40 <160..>271 CDD:441893 69/110 (63%)
WD40 repeat 186..231 CDD:293791 32/44 (73%)
WD40 repeat 232..258 CDD:293791 16/25 (64%)
wipi2XP_031748991.1 WD40 repeat 58..99 CDD:293791 31/40 (78%)
WD40 <118..>280 CDD:441893 108/168 (64%)
WD40 repeat 144..181 CDD:293791 23/36 (64%)
WD40 repeat 187..224 CDD:293791 26/36 (72%)
WD40 repeat 231..259 CDD:293791 18/27 (67%)

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