DRSC/TRiP Functional Genomics Resources

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Protein Alignment ERR and nhr-53

DIOPT Version :10

Sequence 1:NP_648183.3 Gene:ERR / 38912 FlyBaseID:FBgn0035849 Length:496 Species:Drosophila melanogaster
Sequence 2:NP_741644.1 Gene:nhr-53 / 180053 WormBaseID:WBGene00003643 Length:364 Species:Caenorhabditis elegans


Alignment Length:158 Identity:28/158 - (17%)
Similarity:48/158 - (30%) Gaps:53/158 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    51 EPFIDGKAVPYDPKYHEEWIRNNANATNENRRP------------RRPRNSD-------GGRNDR 96
            :|.|...:...||...:|.:.|.:..::...:|            ::..:.|       |.....
 Worm   546 KPVITDDSNQLDPSLLDELLANISTLSSVYHKPPEAFVTRLKTTVQKTEDEDYVEGSETGYPEAS 610

  Fly    97 GNQDTGYRRPPPNQG----MGGAPPPPPHI------GNNPNMPPHIQPPNMNQNYRGPPPPPNMN 151
            ||...|...|....|    :..||.|.|.:      .:|..:.|..:|...:             
 Worm   611 GNPVDGAASPSATTGYVTKLAAAPAPVPDLLGDLMGSDNAAIVPVDEPTTPS------------- 662

  Fly   152 QNYQGPPAPNMNQNYQGPPPSNMGQNYQ 179
                |.|.|.:       .|::.||..|
 Worm   663 ----GRPLPVV-------LPASKGQGLQ 679

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ERRNP_648183.3 NR_DBD_ERR 121..217 CDD:143544 10/65 (15%)
NR_LBD 237..493 CDD:472173
nhr-53NP_741644.1 NR_DBD_like 23..98 CDD:413390
Hormone_recep 134..334 CDD:459675
Blue background indicates that the domain is not in the aligned region.

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