DRSC/TRiP Functional Genomics Resources

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Protein Alignment ERR and nhr-110

DIOPT Version :9

Sequence 1:NP_648183.3 Gene:ERR / 38912 FlyBaseID:FBgn0035849 Length:496 Species:Drosophila melanogaster
Sequence 2:NP_001041195.1 Gene:nhr-110 / 178651 WormBaseID:WBGene00003700 Length:424 Species:Caenorhabditis elegans


Alignment Length:400 Identity:81/400 - (20%)
Similarity:148/400 - (37%) Gaps:97/400 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   108 TNASAGAGSGSVRDELRRLCLVCGDVASGFHYGVASCEACKAFF--------KRTIQGNIEYTCP 164
            |:..:.:..|:::      |.||.....|.|:|..:|.||.|||        |........:.|.
 Worm    13 TDPVSASELGAIK------CQVCFLPGHGIHFGAYTCRACAAFFRIVSISKSKCHFSPRPTHKCR 71

  Fly   165 ANNECEINKRRRKACQACRFQKCLLMGMLKEGVRLDR---------VRGGRQKYRRNPVSNSYQT 220
            .|:.|:.....|..|:.||..:||.:||..|.::.||         .:..|.....|.|.:....
 Worm    72 NNSNCKPKIDGRWFCKTCRLTRCLSIGMSPENIQYDRDKFESILKSSKNNRHLQIPNTVESQLCI 136

  Fly   221 MQLLYQSN---TTSLCDVKILEVLNSYEPDALSVQTPPPQVHTTSITNDEASSSSGSIKLESSVV 282
            ..|:..||   .:|.| :.|.:::..    |::....|..:.....|::....:||...|:|.  
 Worm   137 SPLVSFSNRREKSSKC-IDISQIVKK----AVAKLLNPAMIRNIDSTSNLEQLTSGFKNLQSG-- 194

  Fly   283 TPNGTCIFQNNNNNDPNEI-LSVLSDIYDKELVSV---IGWAKQIPGFIDLPLNDQMKLLQVSWA 343
                    |..|....:.| |:..:..::..:.|.   :|::.:...:.|:   .::|:||..|.
 Worm   195 --------QKENIPKIDHITLAHQTQHFNSSMCSAAVWLGYSDRFKTYSDM---QKIKVLQAIWC 248

  Fly   344 -----EILTLQLTFRSLPFNGKLC-----FATD--VWMDEHLAKECGYTEFY------------- 383
                 |.:.:....|.:   || |     |.|.  :.:.::.:.:..|...|             
 Worm   249 IWGRLEGIVMTAKMRII---GK-CEKEQFFLTSDTLIVYDNFSSDLDYCSTYPFEEMKYFFIPRE 309

  Fly   384 -YHCVQIAQRMERISPRR-EEYYLLKALLLANCDILLDD------QSSLRAFRDTILNSLNDVV- 439
             :| ..:...:.::.|.. |..||:..:    |..|...      |..:..|:|.:.|.|::.. 
 Worm   310 MFH-EDVISELVKVQPDDVETTYLMSVV----CLQLTGKRYGGLIQEEMEQFQDILSNDLHEYYI 369

  Fly   440 ------YLLR 443
                  ||||
 Worm   370 NNKMPKYLLR 379

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ERRNP_648183.3 NR_DBD_ERR 121..217 CDD:143544 30/112 (27%)
NR_LBD 237..493 CDD:299703 43/250 (17%)
nhr-110NP_001041195.1 ZnF_C4 25..102 CDD:197701 24/82 (29%)
Hormone_recep 195..407 CDD:365875 35/196 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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