DRSC/TRiP Functional Genomics Resources

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Protein Alignment ERR and nhr-16

DIOPT Version :10

Sequence 1:NP_648183.3 Gene:ERR / 38912 FlyBaseID:FBgn0035849 Length:496 Species:Drosophila melanogaster
Sequence 2:NP_494785.1 Gene:nhr-16 / 173781 WormBaseID:WBGene00003615 Length:388 Species:Caenorhabditis elegans


Alignment Length:427 Identity:94/427 - (22%)
Similarity:168/427 - (39%) Gaps:111/427 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   115 GSGSVRDELRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPANNECEINKRRRKAC 179
            |....:|::...|.:|.:.|.|||:|..:|.||.|||:||:.....|:|..||:|::....|..|
 Worm     2 GGPRFKDKVFLKCAICQESAEGFHFGAEACRACAAFFRRTVSNRKTYSCQGNNDCDVTINIRCMC 66

  Fly   180 QACRFQKCLLMGMLKEGVRLDRVRGGRQKYRRNPVSNSY--QTMQLLYQSNTTSLCDVKILEVLN 242
            :|||:.||:.:||...||:           :|.|.|.:.  .:|.|...||              
 Worm    67 RACRYIKCIEVGMNPAGVQ-----------QRLPPSKTLVEVSMDLPTVSN-------------- 106

  Fly   243 SYEPDALSVQTPPPQVHTTSITNDEASSSSGSI----KLESSVVT----------PNGTCIFQNN 293
               |..||..:||     :|:.....||.|..:    |:..|..|          .:|..|||:|
 Worm   107 ---PSILSFPSPP-----SSLMLHIPSSYSNQMPILDKMRKSYETLCNARKTLHRKDGANIFQDN 163

  Fly   294 NNNDPNEILSVLSDIYDKELVS-VIGWAKQIPGFIDLPLNDQMKLLQVSWAEILTLQLTF----R 353
            .........::...:.|.:|.| .:.|.  ...|.:|.::.:..|...::.....::..|    |
 Worm   164 VPKPVTYKKAIDQGMKDVKLTSDWVSWC--FEDFKNLSIDQKKILFHNAYTPYFMMEGGFLSHIR 226

  Fly   354 SLPFNGKLCFATDVWMDEHLAKECG-YTE-----FYYHCV----QIAQR-MERI-SPRRE----- 401
            :.|              |||....| |.:     .:|:|.    ||:.: ::|: .|..:     
 Worm   227 NTP--------------EHLVMPSGDYIDTLDLNSFYNCSESDRQISSKEIDRLFKPSNDRFIKS 277

  Fly   402 -------------EYYLLKALLLANCDILLDDQSSLRAFRDTILNSLNDVVYLLRHSSAVSHQQQ 453
                         |:::|..|||.:..::...:..:..........|.::.:.:|:...|..   
 Worm   278 VTLPMMSLQLDIFEFFVLFTLLLWDTGLIEISEECIEIGTKVKTQVLKELDFYMRNVKKVEE--- 339

  Fly   454 LLLLLPSLRQAD--DILRRFWRGIAR-DEVITMKKLF 487
                 |.:|.|:  ::|....:|:.| .:.:.:.|:|
 Worm   340 -----PLVRTANIVNLLPAVQKGVRRIQDDLEVTKVF 371

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ERRNP_648183.3 NR_DBD_ERR 121..217 CDD:143544 35/95 (37%)
NR_LBD 237..493 CDD:472173 54/303 (18%)
nhr-16NP_494785.1 ZnF_C4 13..81 CDD:197701 29/67 (43%)
NR_LBD 177..356 CDD:472173 33/202 (16%)

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