DRSC/TRiP Functional Genomics Resources

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Protein Alignment Uxs and rml-4

DIOPT Version :9

Sequence 1:NP_648182.1 Gene:Uxs / 38911 FlyBaseID:FBgn0035848 Length:441 Species:Drosophila melanogaster
Sequence 2:NP_001040727.1 Gene:rml-4 / 173762 WormBaseID:WBGene00015298 Length:631 Species:Caenorhabditis elegans


Alignment Length:337 Identity:91/337 - (27%)
Similarity:146/337 - (43%) Gaps:54/337 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   116 KRILITGGAGFVGSHLVDDLMVQGHEVIVVDNFFTGRK-------RNV-EHWLGHENFELIHHDI 172
            |.::||||.||:||:.|:.:    |:.....||....|       :|| |.......::|:..||
 Worm     6 KNVVITGGCGFIGSNFVNYI----HDAWPTCNFVNIDKLILNSDTQNVAESVRNSPRYKLVLTDI 66

  Fly   173 VNPLFI-------EIDEIYHLASPASPPHYMYNPVKTIKTNTMG------TINVLGLAKRVMAKV 224
            .|...|       |||.:.|.|:..:.........:.::.|.:.      |:...|..||.:.  
 Worm    67 KNEAAILNVFEQNEIDTVIHFAADCTSTRCYNETAEAVQNNVLSFIQFLETVRTYGKIKRFVH-- 129

  Fly   225 LIASTSEVYGDPTV--HPQPETYWGHVNPIGPRACYDEGKRVSETLSYAYAKQEKVQVRVARIFN 287
              .||.|||||..:  :.|.:..:..:.|..|   |...|...|....||..|..:.:..||:.|
 Worm   130 --ISTDEVYGDSDLSENEQGKVEFSRLVPGNP---YAATKIAGEAYVRAYQTQYNLPIVTARMNN 189

  Fly   288 TYGPRMHMNDGRVVSNFI-LQALRNETITVYGNGKQTRSFQYVSDLVDGMIALMASNYTQPV-NL 350
            .|||...  |.:||..|| :..:|.| .|:.|:|||.||:.:|.|...|:.|:........: ||
 Worm   190 IYGPNQW--DVKVVPRFIEIAKVRGE-YTIQGSGKQLRSWLFVDDASAGLKAVCEKGELHEIYNL 251

  Fly   351 GNPVEQTIGEFAEIIKKLVGGPSVIKQSKAMEDDPQRRKPD-----------ITRARQLLHWEPK 404
            |...|:.:.:.|:.|::.|.    ::..:|.|....:..||           |.:|:..|.|||.
 Worm   252 GTYYEKNVADLAKTIQEEVD----LQLGRAHEPPKYKSIPDRPYNDLRYLISIEKAKNDLGWEPT 312

  Fly   405 VPLETGLQRTIS 416
            ...:.|::.|::
 Worm   313 TSFDDGMRHTVA 324

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
UxsNP_648182.1 WcaG 116..424 CDD:223528 91/337 (27%)
UGD_SDR_e 116..419 CDD:187541 91/337 (27%)
rml-4NP_001040727.1 PLN02260 3..625 CDD:215146 91/337 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D289613at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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