DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mus301 and Polq

DIOPT Version :9

Sequence 1:NP_648178.1 Gene:mus301 / 38905 FlyBaseID:FBgn0002899 Length:1051 Species:Drosophila melanogaster
Sequence 2:NP_084253.1 Gene:Polq / 77782 MGIID:2155399 Length:2544 Species:Mus musculus


Alignment Length:864 Identity:262/864 - (30%)
Similarity:415/864 - (48%) Gaps:154/864 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   245 YGLPDKVKKMILE--HK-GINSLYEWQDECLNLPAIRQRKNLIYALPTSGGKTLVAEILMLRELL 306
            :|||    |.:||  |. |:..::|||.|||.|..:.:.|||:|:.|||.|||||||:|:|:.:|
Mouse    73 WGLP----KAVLEKYHSFGVRKMFEWQAECLLLGHVLEGKNLVYSAPTSAGKTLVAELLILKRVL 133

  Fly   307 CRERNVLFILPYVSIVQEKVSAMSPFAIDLDFIVEEYTAGKGKCPPQPRRKRRSLFIASIEKGAV 371
            ...:..|||||:||:.:||...:.....::...|:.|   .|...|..:.....:.:.:||:...
Mouse   134 ETRKKALFILPFVSVAKEKKCYLQSLFQEVGLKVDGY---MGSTSPTGQFSSLDIAVCTIERANG 195

  Fly   372 LMDSLIDVQRPHEIGLVVVDELHLIGEKGRGATLEAFLTKVMF---------------LNANIQI 421
            |::.||:..:...:|:|||||||::|:..||..||..|||:.:               |:..:||
Mouse   196 LVNRLIEENKMDLLGMVVVDELHMLGDSHRGYLLELLLTKICYVTRKSASHQAESASTLSNAVQI 260

  Fly   422 VGMSATIGNLSEISSFLNADVYTRGFRPVELKEYIKCGPDLLEINSAGQTLEEIFVPSRSVEYNY 486
            ||||||:.||..::|:|||::|...||||.|.|.||.|..:.:   :...|...|.|...|    
Mouse   261 VGMSATLPNLQLVASWLNAELYHTDFRPVPLLESIKIGNSIYD---SSMKLVREFQPLLQV---- 318

  Fly   487 SEAVKRADPDHLAGLISECAPE-HCCLVFCPSRKNCENVALLLSRIVPKHKFFE-HRRSE----- 544
                 :.|.||:..|..|...: |..|:||||:|.||.||.:::|     :|:. |.:.|     
Mouse   319 -----KGDEDHIVSLCYETIQDNHSVLIFCPSKKWCEKVADIIAR-----EFYNLHHQPEGLVKS 373

  Fly   545 ------------KLDLMDALDKMCGILSPVLAKTLPYGIAYHHSGLTTDERKYIETAYRFGVVTV 597
                        .|::||.|.:....|..||..|:|:|:|:||:|||.:||..||.|:|.|.:.|
Mouse   374 SEFPPVILDQKSLLEVMDQLKRSPSGLDSVLKNTVPWGVAFHHAGLTFEERDIIEGAFRQGFIRV 438

  Fly   598 ICCTSTLAAGVNLPAKRVIIRAPYVGQEFLTLCKYKQMVGRAGRAGLGEAGESILIAQSKDN--- 659
            :..||||::||||||:|||||.|....:.|.:..||||||||||.|:...|||||:.::.:.   
Mouse   439 LAATSTLSSGVNLPARRVIIRTPIFSGQPLDILTYKQMVGRAGRKGVDTMGESILVCKNSEKSKG 503

  Fly   660 --LLVGQMLFSPMDKALSSLDQNEAVGLQSLILSVVGLNLAECRRDLNRLVNSTLLSV------- 715
              ||.|.:  .|:...|....:..|..:::::..:|| .:|...:|:......|.|:.       
Mouse   504 IALLQGSL--EPVHSCLQRQGEVTASMIRAILEIIVG-GVASTSQDMQTYAACTFLAAAIQEGKQ 565

  Fly   716 -----QAKSLEVAVNEIVLRILREMFKNKVLQLAEPQAKSKINSSDIITSQDVSQANRPAGDRRL 775
                 |..:...|::..|..:|    :|:.:|:|||                             
Mouse   566 GMQRNQDDAQLGAIDACVTWLL----ENEFIQVAEP----------------------------- 597

  Fly   776 LIGQSTPFKL---TNIGRAAFKAGIDYKRANAIHKELKQAQQQLILTNYLHLLYLVV-CFNSNER 836
              |..|..|:   |::|.|...:.:.......|..:|::|.:..:|.|.||::|||. .|     
Mouse   598 --GDGTGGKVYHPTHLGSATLSSSLSPTDTLDIFADLQRAMKGFVLENDLHIVYLVTPVF----- 655

  Fly   837 GDELFPADASILFGVYTSLPLDSQAMFKQLGFTEAHAARLFK------TQSVQGPLSLQLNRLYK 895
             ::....|....|.::..||...:.:.:.:|..|...||..|      |:.....:::. .|.:.
Mouse   656 -EDWISIDWYRFFCLWEKLPTSMKRVAELVGVEEGFLARCVKGKVVARTERQHRQMAIH-KRFFT 718

  Fly   896 VLILADILNLLPIPSVASKYNVERGTLQHLISQSTAAASAIVRLCEELEEFWCYKPLFERILHKM 960
            .|:|.|:::.:|:..:..||...||.:|.|...:...|..|......|.  |   ...|.:|.:.
Mouse   719 SLVLLDLISEIPLKDINQKYGCNRGQIQSLQQSAAVYAGMITVFSNRLG--W---HNMELLLSQF 778

  Fly   961 DRCGTF----ELEPLMELPAVKINRARQLYAAGFQTIGDIARVRPSHLVQSLEH-MPLRVATEIV 1020
            .:..||    ||..|:.:..:...|||.|||:||.|:.|:||...:.:..:|:: :|.:.|    
Mouse   779 QKRLTFGIQRELCDLIRVSLLNAQRARFLYASGFLTVADLARADSAEVEVALKNSLPFKSA---- 839

  Fly  1021 SAAKIILMKKLDHLEEETE 1039
                   .|.:|..||..|
Mouse   840 -------RKAVDEEEEAAE 851

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mus301NP_648178.1 BRR2 247..998 CDD:224125 251/818 (31%)
DEXHc_POLQ-like 247..449 CDD:350784 82/219 (37%)
PolqNP_084253.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..57
PRK02362 75..830 CDD:235032 253/828 (31%)
DEAD 95..268 CDD:278688 65/175 (37%)
DEAH box. /evidence=ECO:0000255|PROSITE-ProRule:PRU00541 215..218 2/2 (100%)
HELICc 411..484 CDD:197757 42/72 (58%)
Interaction with RAD51. /evidence=ECO:0000250|UniProtKB:O75417 844..890 4/8 (50%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 896..955
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1022..1058
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1128..1167
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1266..1288
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1331..1353
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1478..1501
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1557..1591
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1606..1697
PolA 1852..2540 CDD:223820
DnaQ_like_exo 1853..2040 CDD:299142
DNA_pol_A_theta 2046..2539 CDD:176475
Loop 1. /evidence=ECO:0000250|UniProtKB:O75417 2097..2132
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2104..2124
Loop 2. /evidence=ECO:0000250|UniProtKB:O75417 2212..2276
Loop 3. /evidence=ECO:0000250|UniProtKB:O75417 2445..2489
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0749
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D103838at33208
OrthoFinder 1 1.000 - - FOG0001214
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_101025
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.720

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