DRSC/TRiP Functional Genomics Resources

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Protein Alignment mus301 and Rs1

DIOPT Version :9

Sequence 1:NP_648178.1 Gene:mus301 / 38905 FlyBaseID:FBgn0002899 Length:1051 Species:Drosophila melanogaster
Sequence 2:NP_001286188.1 Gene:Rs1 / 44087 FlyBaseID:FBgn0021995 Length:782 Species:Drosophila melanogaster


Alignment Length:762 Identity:147/762 - (19%)
Similarity:270/762 - (35%) Gaps:237/762 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   117 DLADEENADKLFKKINLNDLSIAEMEDIFHGADDFSDPMVQNTQLFLDAMTFKK----PKTPEKL 177
            :|:::.:|:..::...|....:.|.|   .|.:..|.....|...:.|.|.:.|    .||.:|:
  Fly    21 NLSEDSDAEVEYQPTKLRHKKVTEFE---KGFEFVSSVKEYNQDTWDDLMKYVKRKARTKTDDKI 82

  Fly   178 LAPLKDDSMSFISKSVIEGLVQGTQY-VTCEELKNQSLL------------------DPVNWETQ 223
            .|.|:....   :::|......|::. ::.:|||:.:|.                  :....|..
  Fly    83 AARLQKRGG---AEAVAAEQSDGSEIDLSEDELKHDNLRLREKKESKKKKKKAGEEDEEDEGEKM 144

  Fly   224 AFADFEKNNQDIDKFPSKGEFYGLPDKVKKMILEHKGI-NSLYEWQDECLNLPAIRQRKNLIYAL 287
            .|||..:.|:.|.      .||.:  .:.:.::...|: ..:|....:...:|.....:::....
  Fly   145 QFADTVEANEQIT------SFYQM--NLSRPLMRAIGVLGYIYPTPIQASTIPVALLGRDICGCA 201

  Fly   288 PTSGGKTLVAEILMLRELLCRERN------VLFILPYVSI---VQEKVSAMSPF-AIDLDFIVEE 342
            .|..|||....:..|..||.|..|      ||.::|...:   |.:....:..| .||:...:..
  Fly   202 ATGTGKTAAYMLPTLERLLYRPLNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTTIDVGLAIGG 266

  Fly   343 YTAGKGKCPPQPRRKRRSLFIASIEKGAVLMDSL-------IDVQRPHEIGLVVVDELHLIGEKG 400
            ...   |......|:...:.||:..:   |:|.:       :|     .|.::::||...:    
  Fly   267 LDV---KAQEAVLRQNPDIVIATPGR---LIDHIKNTPSFTLD-----SIEVLILDEADRM---- 316

  Fly   401 RGATLEAFLTKVM--FLNA---NIQIVGMSATIGNLSEISSFLNADVYTRGFRPVELKEYIKCGP 460
                |:.:..:.|  .:|:   ..|.:..|||   :||         ..:....|.|.:.||   
  Fly   317 ----LDEYFAEQMKEIINSCCKTRQTMLFSAT---MSE---------QVKDLAAVSLDKPIK--- 362

  Fly   461 DLLEINSAGQ---TLEEIFVPSRSVEYNYSEAVKRADPDHLAGLISECAPEHCCLVFCPSRKNCE 522
              :.:|:..|   .|.:.|:..|..:....|.:       ||.||.....:| |:||..::|...
  Fly   363 --VFVNNNQQVAFNLRQEFIRIREDKEGDREPI-------LASLICRTFHDH-CMVFVQTKKQAH 417

  Fly   523 NVALLLSRIVPKHKFFEHRRSEKLDLMDALDKMCGILSPVLAKTLPYGIAYHHSGLTTDERKYIE 587
            .:.:||                            |:|. |.|..|       |..||..:|  :|
  Fly   418 RLHILL----------------------------GLLG-VRAGEL-------HGNLTQQQR--LE 444

  Fly   588 TAYRF--GVVTVICCTSTLAAGVNLPAKRVIIR--APYVGQEFLTLCKYKQMVGRAGRAGLGEAG 648
            :..:|  ..:.|:..|...|.|:::...:.:|.  .|      :|...|...|||..||  |.||
  Fly   445 SLKKFKEEQIDVLIATDVAARGLDIVGVKTVINFVMP------ITTEHYIHRVGRTARA--GRAG 501

  Fly   649 ESILIAQSKDNLLVGQMLFSPMDKALSSLDQNEAVGLQSLILSVVGLNLAECRRDLNRLVNSTLL 713
            .|:.:|..|:..:|                                       :|:.:...||: 
  Fly   502 ISVSLAGEKERKIV---------------------------------------KDIIKNAESTI- 526

  Fly   714 SVQAKSLEVAVNEIVLRILREMFKNKVLQLAEPQAKSKINSSD-----IITSQDVSQANRPAGDR 773
                      .|.|:...:.|.::||:..| ||:.::.::...     ..|.|.:|:..|.    
  Fly   527 ----------KNRIIPPEIIEKYRNKLTSL-EPEIQNILDEEQAERQLAKTEQQLSKTERK---- 576

  Fly   774 RLLIGQSTPFKLTNIGRAAFKAGIDYKRANAIHKELKQAQQ-QLILT 819
              |:||      ||..|..|:.           |:.::|:: :|.||
  Fly   577 --LLGQ------TNERRGWFQT-----------KQQREAEKDRLALT 604

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mus301NP_648178.1 BRR2 247..998 CDD:224125 117/609 (19%)
DEXHc_POLQ-like 247..449 CDD:350784 38/224 (17%)
Rs1NP_001286188.1 PTZ00424 148..537 CDD:185609 100/536 (19%)
DEADc 159..364 CDD:238167 44/242 (18%)
Helicase_C 393..498 CDD:278689 35/158 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24031
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.100

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