DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG7504 and UPF1

DIOPT Version :9

Sequence 1:NP_001137907.1 Gene:CG7504 / 38904 FlyBaseID:FBgn0035842 Length:1676 Species:Drosophila melanogaster
Sequence 2:XP_016882594.1 Gene:UPF1 / 5976 HGNCID:9962 Length:1137 Species:Homo sapiens


Alignment Length:773 Identity:209/773 - (27%)
Similarity:328/773 - (42%) Gaps:210/773 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   993 QDVLMPIPPEFDSFKNYREIFVPLMKLELLSTIERDYKINNKNTFSVSLINVETQD-MCYRLVTR 1056
            |.||:    .::....|:.||.||:||      |.||....|.:        :||| :..|....
Human   290 QHVLL----RYEDAYQYQNIFGPLVKL------EADYDKKLKES--------QTQDNITVRWDLG 336

  Fly  1057 VNSKPFGKFVLYTLYCCGMLKETFAN-------LLELKFVSGNVFDLTFEILKQDISE------E 1108
            :|.|....|.|        .|....|       |.:::.:.|:...|.:   |.|::.      .
Human   337 LNKKRIAYFTL--------PKTDSGNEDLVIIWLRDMRLMQGDEICLRY---KGDLAPLWKGIGH 390

  Fly  1109 KLK-----NIKQLT--ARPVVDSLRVELGA-LSAVHQLR--------SSPLCRRILKPTQTVNEV 1157
            .:|     |:.|.|  ...:...||..:|| :...|..:        |....:..|| |..|:|.
Human   391 VIKVPDNANLTQHTDYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALK-TFAVDET 454

  Fly  1158 S----------------------LPKQPFTFKGCHKLNEHQENIVLHTYQRIIDDLQPSLTLIQG 1200
            |                      |||: ||.:|...||..|...|....||       .|:||||
Human   455 SVSGYIYHKLLGHEVEDVIIKCQLPKR-FTAQGLPDLNHSQVYAVKTVLQR-------PLSLIQG 511

  Fly  1201 PPGTGKSRVISELCLQTLYGNAAKTLDRKILICAHSNTAVDHIVGLLGSVLRVMNRDQFHLLRFG 1265
            ||||||:     :...|:..:.|:..:..:|:||.||.|||.:.            ::.|  :.|
Human   512 PPGTGKT-----VTSATIVYHLARQGNGPVLVCAPSNIAVDQLT------------EKIH--QTG 557

  Fly  1266 MHEKMSHYSRPFSLEAHFNKAKEQKLQRVSKENAEILKKQ------HNDLK--DEIQQLKEKTNL 1322
            :                       |:.|:..::.|.:...      ||.::  |.:.:|::    
Human   558 L-----------------------KVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQK---- 595

  Fly  1323 TSTYLLQQLQQKEKKLQLISNQLSPPLTQREEFEISHMCVTRANIICTTLSSCV-----KLANYV 1382
                 ||||:.:..:|.....:....|.:..|.|:    :..|::||.|   ||     :||. :
Human   596 -----LQQLKDETGELSSADEKRYRALKRTAEREL----LMNADVICCT---CVGAGDPRLAK-M 647

  Fly  1383 DFFDICIVDEATQCTEPWTLLPMRFGLTHMVLVGDMQQLPAVVLSKKAIDFGLSNSMFDRIQRSL 1447
            .|..| ::||:||.|||..::|:..|...::||||..||..||:.|||...|||.|:|:|:.   
Human   648 QFRSI-LIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLV--- 708

  Fly  1448 QTQLDKPGSYHLMHTKLFKLSTQYRMHPEICRWPNQYFYEDQLINAECTA---------RFASPL 1503
                       ::..:..:|..||||||.:..:|:..|||..|.|....|         ::..|.
Human   709 -----------VLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPD 762

  Fly  1504 IP--YCVINLKYTCDSNGAQNKSISNNEEARFVAKLLTEMDKHMPSKRFSYGLISPYQNQCYALS 1566
            .|  :.|...:....|:|.   |..|..||..|.|:.|::.| ..:|....|:|:||:.|...|.
Human   763 KPMFFYVTQGQEEIASSGT---SYLNRTEAANVEKITTKLLK-AGAKPDQIGIITPYEGQRSYLV 823

  Fly  1567 QVI--------PSHMNITPQTVDSYQGLEKDVIIISNART---RGCGFLTNYQRLNVALTRPRRC 1620
            |.:        ..:..:...:||::||.|||.||:|..|.   :|.|||.:.:||||||||.|..
Human   824 QYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYG 888

  Fly  1621 LVICGNFEDLKSVEMWRNLLDDARKRKVYFNLDRDDVNDLDRSLIK----KMMVNTIN 1674
            ::|.||.:.|....:|.:||:..:::||   |....:|:|..||::    :.:|||||
Human   889 VIIVGNPKALSKQPLWNHLLNYYKEQKV---LVEGPLNNLRESLMQFSKPRKLVNTIN 943

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7504NP_001137907.1 FHA 4..96 CDD:238017
FHA <10..101 CDD:224630
AAA_11 1171..1428 CDD:289831 71/269 (26%)
AAA_19 1194..1251 CDD:289986 21/56 (38%)
YtxH <1293..1347 CDD:295162 11/61 (18%)
AAA_12 1435..1626 CDD:289832 65/212 (31%)
UPF1XP_016882594.1 DNA2 145..928 CDD:224037 202/756 (27%)
DEXXQc_UPF1 489..722 CDD:350797 82/313 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1112
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D62494at2759
OrthoFinder 1 1.000 - - FOG0000219
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
43.820

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