DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG7504 and Upf1

DIOPT Version :9

Sequence 1:NP_001137907.1 Gene:CG7504 / 38904 FlyBaseID:FBgn0035842 Length:1676 Species:Drosophila melanogaster
Sequence 2:NP_001285145.1 Gene:Upf1 / 32153 FlyBaseID:FBgn0030354 Length:1180 Species:Drosophila melanogaster


Alignment Length:793 Identity:215/793 - (27%)
Similarity:335/793 - (42%) Gaps:178/793 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   956 WIRRENKPVNDIRQHSRS---ILKWANQWLKHGSVDAVAEQDVLMP-IPPE-------FDSFKNY 1009
            |:.::......:|....|   |.|....|.:  :::|.. ||:..| |..|       ::....|
  Fly   218 WLVKQPSEQGQLRARQISAAQINKLEELWKE--NIEATF-QDLEKPGIDSEPAHVLLRYEDGYQY 279

  Fly  1010 REIFVPLMKLELLSTIERDYKINNKNTFSVSLINVETQDMCYRLVTRVNSKPFGKFVLYTLYCCG 1074
            .:.|.||::||    .|.|.|:..    |.:..|:|.     |....:|.|....|.|  .....
  Fly   280 EKTFGPLVRLE----AEYDQKLKE----SATQENIEV-----RWDVGLNKKTIAYFTL--AKTDS 329

  Fly  1075 MLKETFANLLELKFVSGNVFDLTFEI-----LKQDISEEKLKNIKQLTARPV--VDSLRVELGAL 1132
            .:|....:.|.|.:| |.:::...||     :..:..::....:|..|..||  ..:..|:....
  Fly   330 DMKLMHGDELRLHYV-GELYNPWSEIGHVIKVPDNFGDDVGLELKSSTNAPVKCTSNFTVDFIWK 393

  Fly  1133 SAVHQLRSSPLCRRILKPTQTVN----------------EVSL-PKQPFTFKGCH--KLNEHQEN 1178
            .......:..||:..:......|                ||.. ..||..|...|  .||..|..
  Fly   394 CTSFDRMTRALCKFAIDRNSVSNFIYSRLLGHGRADSNDEVLFRGPQPKLFSAPHLPDLNRSQVY 458

  Fly  1179 IVLHTYQRIIDDLQPSLTLIQGPPGTGKSRVISELCLQ--TLYGNAAKTLDRKILICAHSNTAVD 1241
            .|.|..||       .|:||||||||||:...:.:..|  .|:|..       :|:||.||||||
  Fly   459 AVKHALQR-------PLSLIQGPPGTGKTVTSATIVYQLVKLHGGT-------VLVCAPSNTAVD 509

  Fly  1242 HIVGLLGSVLRVMNRDQFHLLRFGMHEKMSHYSRPFSLEAHFNKAKEQKLQRVSKENAEILKKQH 1306
            .:.       ..::|....::|.....:.: ...|.|..|..|:.:..      :.|:|:.|   
  Fly   510 QLT-------EKIHRTNLKVVRVCAKSREA-IDSPVSFLALHNQIRNM------ETNSELKK--- 557

  Fly  1307 NDLKDEIQQLKEKTNLTSTYLLQQLQQKEKKLQLI----SNQLSPPLTQREEFEISHMCVTRANI 1367
                  :||||::|...|:       ..||:.:.:    .|||                :..|::
  Fly   558 ------LQQLKDETGELSS-------ADEKRYRNLKRAAENQL----------------LEAADV 593

  Fly  1368 ICTTLSSCV-----KLANYVDFFDICIVDEATQCTEPWTLLPMRFGLTHMVLVGDMQQLPAVVLS 1427
            ||.|   ||     :|:. |.|..| ::||:.|.|||..::|:..|...::||||..||..||:.
  Fly   594 ICCT---CVGAGDGRLSR-VKFTSI-LIDESMQSTEPECMVPVVLGAKQLILVGDHCQLGPVVMC 653

  Fly  1428 KKAIDFGLSNSMFDRIQRSLQTQLDKPGSYHLMHTKLFKLSTQYRMHPEICRWPNQYFYEDQLIN 1492
            |||...|||.|:|:|:.              ::..:.|:|..|||||||:.::|:.:|||..|.|
  Fly   654 KKAARAGLSQSLFERLV--------------VLGIRPFRLEVQYRMHPELSQFPSNFFYEGSLQN 704

  Fly  1493 AECTA--------RFASPLIP--YCVINLKYTCDSNGAQNKSISNNEEARFVAKLLTEMDKHMPS 1547
            ..|..        .:..|..|  :.|...:.....:|.   |..|..||..|.|:.|...| ...
  Fly   705 GVCAEDRRLKLDFPWPQPERPMFFLVTQGQEEIAGSGT---SFLNRTEAANVEKITTRFLK-AGI 765

  Fly  1548 KRFSYGLISPYQNQCYALSQVIP--------SHMNITPQTVDSYQGLEKDVIIISNART---RGC 1601
            |....|:|:||:.|...|.|.:.        .:..|...:||::||.|||:||:|..|:   :|.
  Fly   766 KPEQIGIITPYEGQRAYLVQYMQYQGSLHSRLYQEIEIASVDAFQGREKDIIIMSCVRSNERQGI 830

  Fly  1602 GFLTNYQRLNVALTRPRRCLVICGNFEDLKSVEMWRNLLDDARKRKVYFNLDRDDVNDLDRSLI- 1665
            |||.:.:||||||||.:..::|.||.:.|...::|.:||:..:.|||   |....:|:|..||| 
  Fly   831 GFLNDPRRLNVALTRAKFGIIIVGNPKVLAKQQLWNHLLNFYKDRKV---LVEGSLNNLKESLIH 892

  Fly  1666 ---KKMMVNTINL 1675
               .|.:||::|:
  Fly   893 FQKPKKLVNSMNI 905

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7504NP_001137907.1 FHA 4..96 CDD:238017
FHA <10..101 CDD:224630
AAA_11 1171..1428 CDD:289831 76/267 (28%)
AAA_19 1194..1251 CDD:289986 23/58 (40%)
YtxH <1293..1347 CDD:295162 14/57 (25%)
AAA_12 1435..1626 CDD:289832 66/211 (31%)
Upf1NP_001285145.1 UPF1_Zn_bind 98..249 CDD:286500 6/32 (19%)
DNA2 122..897 CDD:224037 211/783 (27%)
Mis12 210..299 CDD:283509 21/87 (24%)
AAA_19 458..>515 CDD:289986 27/77 (35%)
AAA_12 661..857 CDD:289832 68/213 (32%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45438967
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1112
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D62494at2759
OrthoFinder 1 1.000 - - FOG0000219
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR10887
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
65.850

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